PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf04657g02001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 326aa    MW: 36104.8 Da    PI: 10.0982
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf04657g02001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.42.2e-102374147
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                              +++WT+eE+  l  +v ++G+g W+tI            R+  ++k++w++ 
  Niben101Scf04657g02001.1 23 KLKWTPEEEVALRAGVLKYGPGKWRTILGDPEfsgvlYLRSNVDLKDKWRNM 74
                              689***************************99999**88***********95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.12E-142089IPR009057Homeodomain-like
SMARTSM007171.2E-42277IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.4E-122374IPR009057Homeodomain-like
PfamPF002499.2E-72374IPR001005SANT/Myb domain
PROSITE profilePS500907.122375IPR017877Myb-like domain
CDDcd116601.16E-162575No hitNo description
SMARTSM005269.8E-13136201IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467852.88E-16137214IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150422.539138206IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.101.1E-14141207IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005381.8E-8143199IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0000786Cellular Componentnucleosome
GO:0005730Cellular Componentnucleolus
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
GO:0033613Molecular Functionactivating transcription factor binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0070491Molecular Functionrepressing transcription factor binding
GO:1990841Molecular Functionpromoter-specific chromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MLLTKPGLIW ELHFLNALMG APKLKWTPEE EVALRAGVLK YGPGKWRTIL GDPEFSGVLY  60
LRSNVDLKDK WRNMTVMANG WGSREKAKLA LKRMIQAPMQ DESSAAVTSA ADSDAEIPEA  120
RPAPTSRGSP QHGGSRRSIL RLDNLIMDAI SNLNEPGGSY KATIFTYIED QYWETPNFKS  180
LLSAKLKYLT ATGKLIKMKR KYKVAPKLTF SDRRRNLPLP LLDSSQRICS KVDQDDINIL  240
TRSQIDLDLE KIRNMSPQEA AAAAARAVAE ADTAIAKAAE ASRKAEAAAA EAVAEQVFAE  300
AAMKTLQERS IPRMLVNMVK KFVGME
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000269|PubMed:19102728}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00607ChIP-seqTransfer from AT1G49950Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019248276.10.0PREDICTED: telomere repeat-binding factor 1-like isoform X1
SwissprotQ8VWK41e-86TRB1_ARATH; Telomere repeat-binding factor 1
TrEMBLA0A1S4DCG00.0A0A1S4DCG0_TOBAC; telomere repeat-binding factor 1-like isoform X2
TrEMBLA0A1U7WEG10.0A0A1U7WEG1_NICSY; telomere repeat-binding factor 1-like isoform X1
STRINGXP_009598548.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28642448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.39e-79telomere repeat binding factor 1
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Features of Arabidopsis genes and genome discovered using full-length cDNAs.
    Plant Mol. Biol., 2006. 60(1): p. 69-85
    [PMID:16463100]
  2. Schrumpfová PP, et al.
    Telomere repeat binding proteins are functional components of Arabidopsis telomeres and interact with telomerase.
    Plant J., 2014. 77(5): p. 770-81
    [PMID:24397874]
  3. Liang SC, et al.
    Kicking against the PRCs - A Domesticated Transposase Antagonises Silencing Mediated by Polycomb Group Proteins and Is an Accessory Component of Polycomb Repressive Complex 2.
    PLoS Genet., 2015. 11(12): p. e1005660
    [PMID:26642436]
  4. Fulcher N,Riha K
    Using Centromere Mediated Genome Elimination to Elucidate the Functional Redundancy of Candidate Telomere Binding Proteins in Arabidopsis thaliana.
    Front Genet, 2015. 6: p. 349
    [PMID:26779251]
  5. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]