PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf04634g00008.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 445aa    MW: 48067.5 Da    PI: 7.3878
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf04634g00008.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.42.3e-20223272255
                       AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                               +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+tae Aa+a+++a+++++g
  Niben101Scf04634g00008.1 223 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEAAARAYDEAALRFRG 272
                               7********.**********7.....337************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.57E-22223281IPR016177DNA-binding domain
SMARTSM003808.1E-39223286IPR001471AP2/ERF domain
PfamPF008474.0E-14223272IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.6E-33223281IPR001471AP2/ERF domain
PROSITE profilePS5103225.752223280IPR001471AP2/ERF domain
PRINTSPR003671.3E-11224235IPR001471AP2/ERF domain
CDDcd000185.05E-16231282No hitNo description
PRINTSPR003671.3E-11246262IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MCFLKVANPR KSSEYVRFTD TSDSEITTTT AAEGGAQPYG QSDQFFEEMI QQQIHQEADY  60
LLSTSSAMPM FTGYSQTREM STMVTALTHV VSGQSYRPDI SGSVTSSFGG GGSGIYSANS  120
PSSAYSSSSS GSRAGQKRSR DQEESVTQIL VQSHHGVYGG FGEFRGGLPS SSVKAEEATS  180
MVAPSNTTIS TITTVPAFTT TPTTTTAAAG GSTEETGGER RRRYRGVRQR PWGKWAAEIR  240
DPHKAARVWL GTFDTAEAAA RAYDEAALRF RGSRAKLNFP ENVSRLLPQL QASQPTTRLA  300
ISSSSTSASS HLPFMAPISQ PTAFFQPHQQ QLQPIQSSDM TRDYWEYSQL LQNPGDFFDQ  360
QQPSGLLEQM FFASSRAVLH SNTTSSLGNS AASSPSSPLI FSGQQSSYYR PQTNQIHGNS  420
SSSSSSSNIS APFWSNSSHY PPSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-24222283163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1218223ERRRRY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019229916.10.0PREDICTED: ethylene-responsive transcription factor ABR1-like isoform X1
TrEMBLA0A314KM120.0A0A314KM12_NICAT; Ethylene-responsive transcription factor abr1
STRINGXP_009792227.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43222140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G43160.11e-15related to AP2 6