PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf04629g03007.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 88aa    MW: 10135.5 Da    PI: 8.0368
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf04629g03007.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.52.4e-11347345
                              SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
           Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                              +WT+   +++ +a +++ ++   +W+ Iar++g g+++++++ ++ 
  Niben101Scf04629g03007.1  3 NWTAKQNKKFEEALALYDKDtcdRWNNIARCVG-GKSAEEVRRHYE 47
                              7********************************.**********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129312.876154IPR017884SANT domain
SMARTSM007172.0E-7152IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.8E-6256IPR009057Homeodomain-like
PfamPF002499.1E-9347IPR001005SANT/Myb domain
CDDcd001671.71E-8350No hitNo description
SuperFamilySSF466896.94E-14357IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 88 aa     Download sequence    Send to blast
MANWTAKQNK KFEEALALYD KDTCDRWNNI ARCVGGKSAE EVRRHYELLV KDITQIENDQ  60
VPLPTYTTAG TNGRSYANEQ RKLCMLPI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-274721179RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009761204.12e-52PREDICTED: protein RADIALIS-like 1
RefseqXP_016481457.12e-52PREDICTED: protein RADIALIS-like 1
SwissprotF4JVB88e-32RADL1_ARATH; Protein RADIALIS-like 1
TrEMBLA0A1S4AXQ95e-51A0A1S4AXQ9_TOBAC; protein RADIALIS-like 1
TrEMBLA0A1U7VFU95e-51A0A1U7VFU9_NICSY; protein RADIALIS-like 1
STRINGXP_009761204.18e-52(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.13e-34RAD-like 1
Publications ? help Back to Top
  1. Zhang M, et al.
    ROOT HAIR DEFECTIVE3 family of dynamin-like GTPases mediates homotypic endoplasmic reticulum fusion and is essential for Arabidopsis development.
    Plant Physiol., 2013. 163(2): p. 713-20
    [PMID:23922269]