PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf04574g07001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family AP2
Protein Properties Length: 490aa    MW: 53831.3 Da    PI: 6.1149
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf04574g07001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.62.3e-11240296155
                       AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 
                               s y+GV++++++gr++A+++d  +       rk  + g ++ +e+Aa+a++ a++k++g
  Niben101Scf04574g07001.1 240 SIYRGVTRHRWTGRYEAHLWDnSCR-RegqARKGRQ-GGYDKEEKAARAYDLAALKYWG 296
                               57*******************4444.2344336655.779999**************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.86E-20240306No hitNo description
SuperFamilySSF541712.88E-15240306IPR016177DNA-binding domain
PfamPF008475.6E-9240296IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.9E-13241305IPR001471AP2/ERF domain
PROSITE profilePS5103217.649241304IPR001471AP2/ERF domain
SMARTSM003801.2E-22241310IPR001471AP2/ERF domain
PRINTSPR003673.2E-6242253IPR001471AP2/ERF domain
PROSITE profilePS510329.585308369IPR001471AP2/ERF domain
SMARTSM003805.5E-5328375IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-5343370IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.6E-6344369IPR001471AP2/ERF domain
PRINTSPR003673.2E-6351371IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MAPDSNNWLS FSLSSMEMLS SSASQSNSML QSNMKLAPTF DGSSSADSHH YYFADNFFPH  60
GWSNPKSQGM YTEGEKEVLG LNINGNDSSI FQNFLDTQIH QQTPPKLEDF LGCDSSSLTQ  120
DSSSLTHQIY EQQQNNGSAV YHQDFKNLAH GFQYQATTAA AFSNNSGSEV DNSVGTEFVS  180
ESCNELAYSQ CPPALSTGAL SLAVNTTNNT QCLEKEKAIV AVVDSESCKK ITDTFGQRTS  240
IYRGVTRHRW TGRYEAHLWD NSCRREGQAR KGRQGGYDKE EKAARAYDLA ALKYWGPTAT  300
TNFPVSNYTK ELEEMKHMTK QEFIASLRRK SSGFSRGASI YRATEEEAAE AYDIAAIKFR  360
GVNAVTNFEM NRYDVEAIMK SSLPVGGTAK RLKLSLEAEQ KSLPSINQQQ TTQSSNSSSS  420
NINFGAMPPV SAIPCGVPFD ATAPFYHHNF FHHSGNAGAS DTSGAVTTMA AAMPLLPSGA  480
EFFIWPHQSY
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019253659.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL6 isoform X1
SwissprotQ52QU21e-135AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6
TrEMBLA0A1S3XSB40.0A0A1S3XSB4_TOBAC; AP2-like ethylene-responsive transcription factor AIL6 isoform X2
TrEMBLA0A1U7WR740.0A0A1U7WR74_NICSY; AP2-like ethylene-responsive transcription factor AIL6 isoform X2
STRINGXP_009782436.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25802449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10510.21e-121AINTEGUMENTA-like 6
Publications ? help Back to Top
  1. Krizek BA
    Intronic sequences are required for AINTEGUMENTA-LIKE6 expression in Arabidopsis flowers.
    BMC Res Notes, 2015. 8: p. 556
    [PMID:26459062]
  2. Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
    AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis.
    Plant Physiol., 2016. 170(1): p. 283-93
    [PMID:26537561]
  3. Krizek BA, et al.
    RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways.
    Plant Physiol., 2016. 171(3): p. 2069-84
    [PMID:27208279]
  4. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]