PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf04568g01008.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ARR-B
Protein Properties Length: 654aa    MW: 70985.9 Da    PI: 6.8894
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf04568g01008.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like89.62.9e-28209262155
                   G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                               kpr++W+ eLH++Fv+av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQk+Rl
  Niben101Scf04568g01008.1 209 KPRVVWSVELHQQFVSAVNQL-GIDKAVPKRILELMNVPGLTRENVASHLQKFRL 262
                               79*******************.********************************8 PP
2Response_reg776.9e-26251331109
                               EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTH CS
              Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgee 83 
                               vl+vdD+ + +++l+q+l+k +y +v++++++  al+ll+e++  +D++l D+ mp+mdG++ll+     e++lp+i++++ g  
  Niben101Scf04568g01008.1  25 VLVVDDDIVCLRILEQMLRKCKY-SVTTCSQAAVALNLLRERRgsFDVVLSDVHMPDMDGFKLLELVGL-EMDLPVIMMSGDGRT 107
                               89*********************.***************999999*******************87754.558************ PP

                               HHHHHHHHTTESEEEESS--HHHHHH CS
              Response_reg  84 edalealkaGakdflsKpfdpeelvk 109
                               +++ + ++ Ga d+l Kp+  eel +
  Niben101Scf04568g01008.1 108 NLVMRGVQHGACDYLIKPIRDEELKN 133
                               ***********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363922.3E-1622642IPR017053Response regulator B-type, plant
SuperFamilySSF521728.11E-3622150IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.9E-4122169No hitNo description
SMARTSM004482.2E-3023135IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.72724139IPR001789Signal transduction response regulator, receiver domain
PfamPF000723.1E-2325133IPR001789Signal transduction response regulator, receiver domain
CDDcd001567.33E-2826138No hitNo description
SuperFamilySSF466891.59E-19206266IPR009057Homeodomain-like
PROSITE profilePS5129411.006206265IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-29207267IPR009057Homeodomain-like
TIGRFAMsTIGR015572.4E-24209262IPR006447Myb domain, plants
PfamPF002499.4E-7211260IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 654 aa     Download sequence    Send to blast
MASMSGDGAT CKSEAADKFP VGLRVLVVDD DIVCLRILEQ MLRKCKYSVT TCSQAAVALN  60
LLRERRGSFD VVLSDVHMPD MDGFKLLELV GLEMDLPVIM MSGDGRTNLV MRGVQHGACD  120
YLIKPIRDEE LKNIWQHVVR KRCSFSKEPE YSGSLDENDR HKRGNDDAEC ASSVIEGADG  180
VLKPQKKKRD AKEEDETEME NDDPNTAKKP RVVWSVELHQ QFVSAVNQLG IDKAVPKRIL  240
ELMNVPGLTR ENVASHLQKF RLYLKRLSGV AQQQGGFPST YCGPIEQNPK LGLLGRFDIQ  300
ALAASGQIPP ETLTALHAEL LGRSSGNLVL PSVEQPHLLQ ASLQQAKCVP VDHVVAYGQP  360
LMKCPPSITN PKLLSQPMMS AEDVHSGFGS RRAKNICMVP SSNLTGLAAP DSNMLMAMMQ  420
HQQQWQKQQQ LEQQQKQSGL SEANHSINVK PSCLVLPSQS PGNFQVGDSP GSVRQACSSS  480
KSSVIDYSVL SPQSNNSSAV VQVLDGELKP ACGLNRLSTA APFTPSVSSC SVHADNSVGL  540
QLHNSSSAFG ASKQLPGFVP NHLGFPVSCN SKPSQILDQG PMRSPGVGKA AAIPSRFAVD  600
ESDSPMCNFS TVKVYTEDTK VKQEPNMNIM ENSKVGPALF QNLPSGDLMS VFSD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-22208268464ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001312865.10.0two-component response regulator ORR21-like
SwissprotQ8H7S71e-146ORR21_ORYSJ; Two-component response regulator ORR21
TrEMBLG1APJ80.0G1APJ8_TOBAC; RRB1 type-b response regulator
STRINGXP_009776286.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA77492130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16857.11e-117response regulator 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]