PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf04560g07009.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 325aa    MW: 37112.4 Da    PI: 8.5178
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf04560g07009.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.98.5e-171462148
                              TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                              rg+W++eEd +l+d ++++G+g +W + +++ g++R++k+c++rw++yl
  Niben101Scf04560g07009.1 14 RGPWSPEEDAKLKDFIHKYGTGgNWIALPQKAGLKRCGKSCRLRWLNYL 62
                              89*********************************************97 PP
2Myb_DNA-binding36.41.2e-1169111246
                               SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
           Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                               g +++eEd  +  +    G++ W+ Ia+ ++ gRt++++k++w++
  Niben101Scf04560g07009.1  69 GDFSEEEDRVICTLYSTIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                               689******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.358962IPR017930Myb domain
SuperFamilySSF466891.39E-2711109IPR009057Homeodomain-like
SMARTSM007171.1E-121364IPR001005SANT/Myb domain
PfamPF002499.9E-161462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.3E-241569IPR009057Homeodomain-like
CDDcd001671.73E-91662No hitNo description
PROSITE profilePS5129422.04363117IPR017930Myb domain
SMARTSM007171.8E-1167115IPR001005SANT/Myb domain
PfamPF002491.7E-1069111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-2370117IPR009057Homeodomain-like
CDDcd001678.66E-871113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MGRAPCCDKA NVKRGPWSPE EDAKLKDFIH KYGTGGNWIA LPQKAGLKRC GKSCRLRWLN  60
YLRPNIKHGD FSEEEDRVIC TLYSTIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLMGL  120
MQSTNQRKSP YFPATNSLQT QPQINSSLFR DLYYTPNNRP NITGLNRQSI SSAHQSNFLY  180
TNQYPYNIQS HNLLMFGEAS CSSSDGSCSQ MSFGKEIKRE EIMSNCLQQG QISSVNAFEE  240
NHQNFTLDYG NSSSNWLDKK PNVYFGNNIT TQLLQFDNVD EVKQQLTSCT NGNNGSTIGC  300
NNNNSLFVFN DENYNKSNEI EMFYY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-26141177108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009800575.10.0PREDICTED: transcription factor RAX2-like
TrEMBLA0A1U7YP150.0A0A1U7YP15_NICSY; transcription factor RAX2-like
STRINGXP_009800575.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.12e-80myb domain protein 36