PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf04528g12009.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 582aa    MW: 64772.1 Da    PI: 6.5575
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf04528g12009.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS411.48.1e-1262125811373
                      GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs 85 
                               l++lL++cA+a+++++l   + l+++++ ++s +gdp+qRl ay++e+L ar   s++++y++l+++e +     + l+++++++
  Niben101Scf04528g12009.1 212 LKQLLIACARALAESKLGDFEVLVTNVRSTVSITGDPIQRLGAYIVEGLVARKELSGTTIYRSLRCKEPA---GNDLLSYMHILY 293
                               689***************************************************9**************9...99********** PP

                      GRAS  86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakf 168
                               e++P+lkf++++aN aI ea  +e+ vHiiDf+i qG+QW+aLlqaLa+Rp+g+p +RiTg+++p s+  + + l ++++rL+ +
  Niben101Scf04528g12009.1 294 EICPYLKFGYMAANGAIAEACRSENYVHIIDFQIAQGTQWMALLQALAARPGGAPYVRITGIDDPVSQyaRGDGLAAVEKRLSAI 378
                               *****************************************************************999999************** PP

                      GRAS 169 AeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesF 253
                                e++++ +efn+ v     +++  +L+v+pgEa+ Vn+ lqlh+++desv+++++rde+++++ksl Pk+v++veqe+++n+++F
  Niben101Scf04528g12009.1 379 SEKFNIAVEFNA-VPVFAPEVTKAMLDVRPGEAVTVNFPLQLHHTPDESVDVNNPRDELIRMIKSLCPKIVTLVEQESNTNTAPF 462
                               ************.688889999*************************************************************** PP

                      GRAS 254 lerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqak 338
                               + rfleal+yy a+f+s++++l+r+ +eri+vE+++l+r+ivnv+aceg+er+erhe l+kW++r+++aGF+++pls+++++ ++
  Niben101Scf04528g12009.1 463 FPRFLEALDYYHAMFESIDVTLARDRKERINVEQHCLARDIVNVIACEGKERVERHELLGKWKSRFMMAGFRQYPLSSYVNSVIR 547
                               ************************************************************************************* PP

                      GRAS 339 lllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                                l+r+++ + y++ e++g+++lgWk+r+L+s+SaW
  Niben101Scf04528g12009.1 548 DLMRRYS-EHYTLVEKDGAMLLGWKERNLISASAW 581
                               *******.55************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098562.776186563IPR005202Transcription factor GRAS
PfamPF035142.8E-123212581IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 582 aa     Download sequence    Send to blast
MDAHHFYDYG VTGSDLSYSS YPTISSLPNR PSGTSKFDSE NSPISPLANY LDSETFTTLS  60
DCQEKHSSTE NLSGASSSSN SSLDYNHYFH RPSPSRYCPP EGLLVFSGGN AVLQNAVHSQ  120
NMQHALLQLE SALMGPDKEV TKSSPSYGGN KAAQTSNQRS RAWTDESKVL HQNETQQSQI  180
SLFTKSGNGI PSQERDKVLY NLPLHGVPSS NLKQLLIACA RALAESKLGD FEVLVTNVRS  240
TVSITGDPIQ RLGAYIVEGL VARKELSGTT IYRSLRCKEP AGNDLLSYMH ILYEICPYLK  300
FGYMAANGAI AEACRSENYV HIIDFQIAQG TQWMALLQAL AARPGGAPYV RITGIDDPVS  360
QYARGDGLAA VEKRLSAISE KFNIAVEFNA VPVFAPEVTK AMLDVRPGEA VTVNFPLQLH  420
HTPDESVDVN NPRDELIRMI KSLCPKIVTL VEQESNTNTA PFFPRFLEAL DYYHAMFESI  480
DVTLARDRKE RINVEQHCLA RDIVNVIACE GKERVERHEL LGKWKSRFMM AGFRQYPLSS  540
YVNSVIRDLM RRYSEHYTLV EKDGAMLLGW KERNLISASA WC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A8e-652095811374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009794690.10.0PREDICTED: scarecrow-like protein 21
RefseqXP_016450028.10.0PREDICTED: scarecrow-like protein 21
SwissprotQ69VG10.0CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLA0A1S3YDF50.0A0A1S3YDF5_TOBAC; scarecrow-like protein 21
TrEMBLA0A1U7Y7940.0A0A1U7Y794_NICSY; scarecrow-like protein 21
STRINGXP_009794690.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34412448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.21e-174GRAS family protein
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]