PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf04474g02003.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 561aa    MW: 61796.8 Da    PI: 4.6819
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf04474g02003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS452.82.2e-1381805521374
                      GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs 85 
                               lv++L++cAeav++++l+ a+al+ ++  la ++  +m+++a+yf+eALa+r+++        + p+++ e++ +++l++   f+
  Niben101Scf04474g02003.1 180 LVHTLMACAEAVQQENLNVADALVRHIGILAVSQSGAMRKVATYFAEALARRIYK--------IYPQDSIESSYTDVLQM--HFY 254
                               689****************************************************........44666654445555544..4** PP

                      GRAS  86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAe 170
                               e++P+lkf+h+taNqaIlea+ ++++vH+iDf+++qG+QWpaL+qaLa Rp+gpp +R+Tg+g+p+++++++l+++g++La++Ae
  Niben101Scf04474g02003.1 255 ETCPYLKFAHFTANQAILEAFTNCNKVHVIDFSLKQGMQWPALIQALALRPGGPPAFRLTGIGPPQPDNTDALQQVGWKLAQLAE 339
                               ************************************************************************************* PP

                      GRAS 171 elgvpfefnvlvakrledleleeLrvkp...gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnses 252
                               ++gv+fef+ +v+++l+dl+ e L++++    E++aVn+v++lhrll++++++e+    vL+ +k+++Pk+v++veqea+hn++ 
  Niben101Scf04474g02003.1 340 TIGVEFEFRGFVTNSLADLDAEILDLRSstvTEVVAVNSVFELHRLLARPGAVEK----VLNSIKQMNPKIVTIVEQEANHNASV 420
                               ************************9999999************************....************************** PP

                      GRAS 253 Flerflealeyysalfdsleaklpres.........eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvp 328
                               Fl+rf eal+yys++fdsl++++++ s         +++ ++++++lgr+i+nvvaceg +r+erhetl++Wr r+ +aGF pv+
  Niben101Scf04474g02003.1 421 FLDRFNEALHYYSTMFDSLDSSVSSSStglnqpivnNQDLVMSEVYLGRQICNVVACEGVDRVERHETLSQWRVRMISAGFDPVH 505
                               ********************99666666666666669************************************************ PP

                      GRAS 329 lsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                               l+++a kqa++ll+ ++ +dgyrvee++g+l+lgW++rpL+++SaWr
  Niben101Scf04474g02003.1 506 LGSNAFKQASMLLALFAgGDGYRVEENDGCLMLGWHTRPLIATSAWR 552
                               **********************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF120412.7E-353298IPR021914Transcriptional factor DELLA, N-terminal
SMARTSM011293.1E-3632105No hitNo description
PROSITE profilePS5098567.458154531IPR005202Transcription factor GRAS
PfamPF035147.8E-136180552IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 561 aa     Download sequence    Send to blast
MKRDRDRENS QDGSSSGKSK IFEEEQPDAG MDELLAVLGY KVKSSDMAEV AQKLEQLEMA  60
MCTTFEDGIS HLSTDTVHKN PSDLSGWVQS MLSELNNTSV PSNFDMIGSI EEKDLGESSS  120
SIVMNEENRI ISDDDLRAIP GGAVFATESN KRQRSCVTLT ADATTRPVVL VDSQETGVRL  180
VHTLMACAEA VQQENLNVAD ALVRHIGILA VSQSGAMRKV ATYFAEALAR RIYKIYPQDS  240
IESSYTDVLQ MHFYETCPYL KFAHFTANQA ILEAFTNCNK VHVIDFSLKQ GMQWPALIQA  300
LALRPGGPPA FRLTGIGPPQ PDNTDALQQV GWKLAQLAET IGVEFEFRGF VTNSLADLDA  360
EILDLRSSTV TEVVAVNSVF ELHRLLARPG AVEKVLNSIK QMNPKIVTIV EQEANHNASV  420
FLDRFNEALH YYSTMFDSLD SSVSSSSTGL NQPIVNNQDL VMSEVYLGRQ ICNVVACEGV  480
DRVERHETLS QWRVRMISAG FDPVHLGSNA FKQASMLLAL FAGGDGYRVE ENDGCLMLGW  540
HTRPLIATSA WRLKAAGDAE L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-6717555114378Protein SCARECROW
5b3h_A2e-6717555113377Protein SCARECROW
5b3h_D2e-6717555113377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). Its degradation is not essential for germination. {ECO:0000250, ECO:0000269|PubMed:15347801}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019232709.10.0PREDICTED: LOW QUALITY PROTEIN: DELLA protein GAI-like
SwissprotQ7Y1B60.0GAI_SOLLC; DELLA protein GAI
TrEMBLM9N8J90.0M9N8J9_NICAT; ELLA domain GRAS family transcription factor
STRINGXP_009796771.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21262462
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.10.0GRAS family protein
Publications ? help Back to Top
  1. Nir I, et al.
    The Tomato DELLA Protein PROCERA Acts in Guard Cells to Promote Stomatal Closure.
    Plant Cell, 2017. 29(12): p. 3186-3197
    [PMID:29150547]