PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf04464g02002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | FAR1 | ||||||||
Protein Properties | Length: 751aa MW: 86393.8 Da PI: 7.0685 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 85.5 | 8.2e-27 | 91 | 193 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.............tekerrtraetrtgCkaklkvkkekd 73 fY+eYA+++GF++ +++s++sk+++e+++++f Cs++g+++e +k+ e++ +ra +t+Cka+++vk++ d Niben101Scf04464g02002.1 91 FYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYEKSanrprsrqgnkqdPENATGRRACAKTDCKASMHVKRRPD 175 9***************************************999999899999888776555556699****************** PP FAR1 74 gkwevtkleleHnHelap 91 gkw ++++e+eHnHel p Niben101Scf04464g02002.1 176 GKWIIHRFEKEHNHELLP 193 ***************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.0E-24 | 91 | 193 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 2.4E-28 | 291 | 383 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.557 | 571 | 607 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 5.7E-6 | 572 | 605 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 1.1E-6 | 582 | 609 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 751 aa Download sequence Send to blast |
MDIDLRLPSR DHDKEEEEEQ NGIINMLDNE EKMHSDDGMH GMLVVVEEKM HAEDGGDMNT 60 PVANIIEFKE DVNLEPLAGM EFESHGEAYA FYQEYARSMG FNTAIQNSRR SKTSREFIDA 120 KFACSRYGTK REYEKSANRP RSRQGNKQDP ENATGRRACA KTDCKASMHV KRRPDGKWII 180 HRFEKEHNHE LLPAQAVSEQ TRRMYAAMAR KFAEYKNVVG LKSDSKGPFE KGRNSAMDGG 240 DINILLEFFI QMQSLNSNFF YAVDVGEDQR VKNLIWVDAK ARHDYANFSD VVSFDTTYIR 300 NKYKMPLALF VGVNQHYQFM LLGCALVSDE SATTFSWVML TWLKAMGGQA PKTVITDHDQ 360 VLKSVISEAL PSPLHYFCMW HILGKVSETL NHVIKQNEKF MAKFEKCIYR SSTDEEFEKR 420 WRKLVDRFDL REAELIHSLY EDRVKWIPTF MGDAFLAGMS TVQRSESVNS FFDKYVHKKT 480 TVQEFVKQYE TILQDRYEEE AKADSDTWNK QPALKSPSPF EKHVAGLYTH AVFKKFQAEV 540 LGAVACIPKR EQQDETTITF GVKDYEKDQD FIVTLNEVKS EISCVCHLFE FKGYLCRHAL 600 IVLQICGVSS IPLQYILKRW TKDAKSKYSM TDGSEDVQSR VQRYNELCYR AMKLSEEGSL 660 SQERYSFALR ALDDAFGSCV TFNNSNKNIL EAGTSSAPAL LCVEDDNQSR SMSKTNKKKN 720 SFTKKRKVNS EPDVMAVGAA DSLQQMYKRN R |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. When associated with PHYA, protects it from being recognized and degraded by the COP1/SPA complex. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269|PubMed:11889039, ECO:0000269|PubMed:12753585, ECO:0000269|PubMed:17012604, ECO:0000269|PubMed:18033885, ECO:0000269|PubMed:18715961, ECO:0000269|PubMed:22634759}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. Up-regulated by white light. {ECO:0000269|PubMed:11889039, ECO:0000269|PubMed:18033885, ECO:0000269|PubMed:22634759}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009804947.1 | 0.0 | PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3 isoform X2 | ||||
Refseq | XP_016481997.1 | 0.0 | PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3-like isoform X2 | ||||
Swissprot | Q9LIE5 | 0.0 | FHY3_ARATH; Protein FAR-RED ELONGATED HYPOCOTYL 3 | ||||
TrEMBL | A0A1S4AZA6 | 0.0 | A0A1S4AZA6_TOBAC; protein FAR-RED ELONGATED HYPOCOTYL 3-like isoform X2 | ||||
TrEMBL | A0A1U7YLK2 | 0.0 | A0A1U7YLK2_NICSY; protein FAR-RED ELONGATED HYPOCOTYL 3 isoform X2 | ||||
STRING | XP_009804946.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA496 | 21 | 103 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22170.2 | 0.0 | far-red elongated hypocotyls 3 |