PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf04456g01013.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Trihelix

Protein Properties

Length: 299aa MW: 34274.4 Da PI: 8.6367

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf04456g01013.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	47.2	6e-15	65	149	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 W+++e+ L+ea ++ r +r++l+ W+ev++k+ + ++er+ +qC+++++ l+k+ykk+k ++ ++s+++yf+++ Niben101Scf04456g01013.1 65 WSEHETFILLEAWGDRFVRHGRKSLRSDEWQEVAEKVsQGSKLERTDTQCRNRLDTLKKKYKKEKMKFAEN-GINTSKWVYFKKM 148 ***********************************555689******************999986.566679***** PP trihelix 86 e 86 + Niben101Scf04456g01013.1 149 D 149 8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.365	63	122	IPR017877	Myb-like domain
Pfam	PF13837	4.6E-21	64	151	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.8E-5	64	130	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 299 aa Download sequence Send to blast
MYENRLRIQD RIAQWISAFD FGSKRSWVRL PLWSEDFAPR VPPPSTAAAT APKPSFGGRN 60 PLSDWSEHET FILLEAWGDR FVRHGRKSLR SDEWQEVAEK VSQGSKLERT DTQCRNRLDT 120 LKKKYKKEKM KFAENGINTS KWVYFKKMDM LLTSTPQQAG ISCGVDSGEY VFMSPKVYLN 180 RANGLDEMRD SPANSGSADG DDDDSEDLPP KRSRNGQSGG SGASFKLIAD SIHKFSEIYV 240 KIENSKRQQM LELEKMRMDF HRDLEMQKRQ IVERAHAEIA RIRQGRDEEN DISAENVSG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009609888.1	1e-179	PREDICTED: trihelix transcription factor ASIL1-like
TrEMBL	A0A1U7W4A7	1e-171	A0A1U7W4A7_NICSY; uncharacterized protein LOC104223665
STRING	XP_009609888.1	1e-178	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7230	24	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	1e-68	Trihelix family protein