PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf04455g01003.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 341aa    MW: 38091.8 Da    PI: 6.2417
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf04455g01003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.11.3e-12128179155
                               CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                       HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                               +r++h ++Er+RR+++N+ ++ +r+l+P++   + ++ + a+i   A++++k+L+
  Niben101Scf04455g01003.1 128 QRMTHIAVERNRRKQMNEYLAVIRSLMPPC---YVQRGDQASIIGGAINFVKELE 179
                               79****************************...*******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.56E-11126183No hitNo description
SuperFamilySSF474594.45E-17126199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.027127178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-13128198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.7E-10128179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-9133184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MALETVIYPQ ESFGYGCKEY YIPANLSNYN YELSLLQGGE DMTFTSLLDT GNYYNMNTES  60
SSSPVMYNIN NAKEYSWDPN YSSLEEPLNV IGEGSPAMTP AARDATVSGR RKRRRTRSCK  120
NKEELENQRM THIAVERNRR KQMNEYLAVI RSLMPPCYVQ RGDQASIIGG AINFVKELEH  180
HLQTLEAQKR THSQQQQQSD CHGSSSTPLF AEYFSFPQYS TRSNHSNSST PADAAAATTC  240
DSPLAVGKPL ALAEIEVTMA ESHANLKILS KRRPKQLLKM VGGLQCLWLT VLHLNVTTVD  300
HMVLYSLSLK LEEGCQLTTA DEIADAVNQL LGRIQEEAAS S
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1110114RKRRR
2110115RKRRRT
3128139RMTHIAVERNRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019247986.10.0PREDICTED: transcription factor bHLH96-like
SwissprotQ9C7T41e-90BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A1J6J5Z60.0A0A1J6J5Z6_NICAT; Transcription factor bhlh96
STRINGXP_009781858.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19962462
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.15e-86bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]