PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf04377g04001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 438aa    MW: 49350.4 Da    PI: 7.1024
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf04377g04001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.54.8e-16106152148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                               +g WT eEd +l++++kq+G + W+ Ia++m   R +kqc++rw+++l
  Niben101Scf04377g04001.1 106 KGQWTDEEDRKLLRLIKQFGVRKWAQIAEKMD-ARAGKQCRERWHNHL 152
                               799*****************************.*************97 PP
2Myb_DNA-binding58.31.8e-18158200145
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                               ++ W++eE++llv+a+kq+G++ W+ Ia+++  gRt++++k++w+
  Niben101Scf04377g04001.1 158 KDTWSEEEELLLVEAHKQFGNK-WAEIAKRID-GRTENSIKNHWN 200
                               679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.724101156IPR017930Myb domain
SMARTSM007172.3E-14105154IPR001005SANT/Myb domain
SuperFamilySSF466891.87E-28105199IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.2E-26107158IPR009057Homeodomain-like
PfamPF139215.4E-19109168No hitNo description
CDDcd001672.35E-14109152No hitNo description
SMARTSM007173.4E-16157205IPR001005SANT/Myb domain
PROSITE profilePS5129418.942157207IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.9E-20159205IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MEGGSSAFRP YQNIPKNYVG SIPPFTATDR FLLSHENYFY PLSSSRSNAN GVSWPKSLLE  60
PSFIEGFFLN EQENGLIEEV KSVQKNKRES GKKAKEGSST TNYLVKGQWT DEEDRKLLRL  120
IKQFGVRKWA QIAEKMDARA GKQCRERWHN HLRPDIKKDT WSEEEELLLV EAHKQFGNKW  180
AEIAKRIDGR TENSIKNHWN AAKRRMNSRR NKKRKNQQDG QNERKNRSNI LQDYIRSVCF  240
ADDSPLTTAT YHDGGGSGGG GGSSSTTTTV TQSNSTITNG TLTYSDDDSP SLLTHHTCDE  300
EMNFMQNLFG KNSLLSDNNG SKAIDPSMEA KVTQIFFDNN SSISNSAFNS FGENPLSKGH  360
EEAQLQYSQH FCPDVYLPYL LDGSSYNLEC FGYGNNMNMQ MNQATGSSSG GNNKVEIDLM  420
ELVSSSHISQ GTYNNTFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C2e-401042052103C-Myb DNA-Binding Domain
1msf_C2e-401042052103C-Myb DNA-Binding Domain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1202213KRRMNSRRNKKR
2208214RRNKKRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019261084.10.0PREDICTED: myb-like protein Q
TrEMBLA0A1J6IV060.0A0A1J6IV06_NICAT; Transcription factor myb98
STRINGXP_009796819.10.0(Nicotiana sylvestris)
STRINGXP_009626870.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA48251941
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58850.14e-59myb domain protein 119