PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf04372g00012.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 845aa    MW: 92184.1 Da    PI: 5.9637
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf04372g00012.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.86e-21128183156
                               TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                  Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                               +++ +++t++q++eLe+lF+++++p++++r eL+k+l+L++rqVk+WFqNrR+++k
  Niben101Scf04372g00012.1 128 KKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLSLETRQVKFWFQNRRTQMK 183
                               688999***********************************************999 PP
2START192.52e-603355741206
                               HHHHHHHHHHHHHHHHC-TT-EEEE...................EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHH CS
                     START   1 elaeeaaqelvkkalaeepgWvkss...................esengdevlqkfeeskv.....dsgealrasgvvdmvlall 61 
                               ela++a++elvk+a+ +ep+W++s+                   e++n +e+++++++  +     + +ea+r++g+v+ ++  l
  Niben101Scf04372g00012.1 335 ELALAAMDELVKMAQTDEPLWFRSVeggreilnheexrsveggrEILNHEEYMRSLTPCIGmrpnsFVSEASREIGMVIINSLAL 419
                               5899*************************99999999999999999999999999999888****9******************* PP

                               HHHHCCCGGCT-TT-S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS CS
                     START  62 veellddkeqWdetla....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqk 135
                               ve+l+d++ +W e+++    + +t++vissg      galqlm aelq+lsplvp R++ f+R+++q+ +g+w++vdvS+d  ++
  Niben101Scf04372g00012.1 420 VETLMDSN-KWAEMFPcliaRTSTTDVISSGmggtrnGALQLMHAELQVLSPLVPiREVNFLRFCKQHAEGVWAVVDVSIDTIRE 503
                               ********.**************************************************************************** PP

                               --.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                     START 136 ppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                                ++ + +  ++ lpSg+l+++++ng+skv+wveh +++++++h l+r+l++ g+ +ga++wvatlqrqce+
  Niben101Scf04372g00012.1 504 TSNAPTFPNSRILPSGCLVQDMPNGYSKVIWVEHGEYDENVIHHLYRPLISAGMGFGAQRWVATLQRQCEC 574
                               *99******************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.8E-21114179IPR009057Homeodomain-like
SuperFamilySSF466891.55E-20114185IPR009057Homeodomain-like
PROSITE profilePS5007117.637125185IPR001356Homeobox domain
SMARTSM003895.2E-19126189IPR001356Homeobox domain
CDDcd000865.62E-19127185No hitNo description
PfamPF000461.7E-18128183IPR001356Homeobox domain
PROSITE patternPS000270160183IPR017970Homeobox, conserved site
PROSITE profilePS5084841.78326577IPR002913START domain
SuperFamilySSF559611.21E-29328378No hitNo description
CDDcd088752.91E-116330573No hitNo description
PfamPF018523.5E-52335574IPR002913START domain
SMARTSM002343.5E-42335574IPR002913START domain
SuperFamilySSF559611.21E-29405574No hitNo description
SuperFamilySSF559611.98E-23593831No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009827Biological Processplant-type cell wall modification
GO:0042335Biological Processcuticle development
GO:0043481Biological Processanthocyanin accumulation in tissues in response to UV light
GO:0048765Biological Processroot hair cell differentiation
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 845 aa     Download sequence    Send to blast
MNFGDFLDNT SGGGGSGGGG ARIVADIPFN NNNSNSSNNN MPAGAISQPR LLTQSLAKSM  60
FNSPGLSLAL QTGMEGQSEV TRMAENYEGN NSNGRRSREE EPDSRSGSDN LEGASGDDQD  120
AADKPPRKKR YHRHTPQQIQ ELESLFKECP HPDEKQRLEL SKRLSLETRQ VKFWFQNRRT  180
QMKTQLERHE NSILRQENDK LRAENMSIRE AMRNPICTNC GGPAMIGEIS LEEQHLRIEN  240
ARLKDELDRV CALAGKFLGR PISSLVNSMP PPMPNSSLEL GVGNNGFGGL SNVPTTLPLA  300
PPDFGVGISN SLPVVASTRQ TTGIERSLER SMYLELALAA MDELVKMAQT DEPLWFRSVE  360
GGREILNHEE XRSVEGGREI LNHEEYMRSL TPCIGMRPNS FVSEASREIG MVIINSLALV  420
ETLMDSNKWA EMFPCLIART STTDVISSGM GGTRNGALQL MHAELQVLSP LVPIREVNFL  480
RFCKQHAEGV WAVVDVSIDT IRETSNAPTF PNSRILPSGC LVQDMPNGYS KVIWVEHGEY  540
DENVIHHLYR PLISAGMGFG AQRWVATLQR QCECLAILMS STVSSRDHTA ITPSGRRSML  600
KLAQRMTNNF CAGVCASTVH KWNKLCAGNV DEDVRVMTRK SVDDPGEPPG IVLSAATSVW  660
LPVSPQRLFD FLRDERLRSE WDILSNGGPM QEMAHIAKGQ DHGNCVSLLR ASAINANQSS  720
MLILQETCID AAGALVVYAP VDIPAMHVVM NGGDSAYVAL LPSGFSIVPD GPGSRGSTTA  780
NFGSNGPSSN GGPDQRISGS LLTVAFQILV NSLPTAKLTV ESVETVNNLI SCTVQKIKAA  840
LHCES
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269|PubMed:10402424}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00421DAPTransfer from AT4G00730Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019259406.10.0PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2
SwissprotQ0WV120.0ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBLA0A1J6ISN20.0A0A1J6ISN2_NICAT; Homeobox-leucine zipper protein anthocyaninless 2
STRINGXP_009602856.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16262465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]