PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf04371g02004.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 556aa    MW: 60630 Da    PI: 7.4513
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf04371g02004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.70.00039215237123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               ++C++Cg  Fs+   L  H+r+H
  Niben101Scf04371g02004.1 215 HECSICGAEFSSGQALGGHMRRH 237
                               78********************9 PP
2zf-C2H212.70.00039458480123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               ++C++Cg  Fs+   L  H+r+H
  Niben101Scf04371g02004.1 458 HECSICGAEFSSGQALGGHMRRH 480
                               78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139122.0E-12134159IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.72135162IPR007087Zinc finger, C2H2
SMARTSM003550.059135157IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280137157IPR007087Zinc finger, C2H2
SuperFamilySSF576675.56E-8213237No hitNo description
SMARTSM003550.01215237IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.827215242IPR007087Zinc finger, C2H2
PfamPF139121.6E-12215239IPR007087Zinc finger, C2H2
PROSITE patternPS000280217237IPR007087Zinc finger, C2H2
SuperFamilySSF576675.56E-8373400No hitNo description
PfamPF139122.0E-12377402IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.72378405IPR007087Zinc finger, C2H2
SMARTSM003550.059378400IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280380400IPR007087Zinc finger, C2H2
SuperFamilySSF576671.87E-5455482No hitNo description
SMARTSM003550.01458480IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.827458485IPR007087Zinc finger, C2H2
PfamPF139121.6E-12458482IPR007087Zinc finger, C2H2
PROSITE patternPS000280460480IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 556 aa     Download sequence    Send to blast
MEISEDSADR TLVFKGKRSK RPRQLSLVGM AVAVASTSST GGGGAGGGSS DDIGGGGEFY  60
SSSIQYSPTT SSTQISTSSE EDEDMANCLI LLAKSGRCQK LQVESTTERK MVKISSRKFT  120
EMATCTTGKA GFYVYECKTC NRTFPSFQAL GGHRTSHKKA KTIVEEKKST ADSENHDHHY  180
HQDEETSNKI NITTPTQIVN KGNSHGNFNS KPKIHECSIC GAEFSSGQAL GGHMRRHRPP  240
PTITATNSTK VTDETTSESS HNDDENSNKE KPRIILSLDL NLPAPPEDDS KFGFSANKQS  300
LVFSSAALYS PTTSSTQIST SSEEDEDMAN CLILLAKSGR CQKLQVESTT ERKMVKISSR  360
KFTEMATCTT GKAGFYVYEC KTCNRTFPSF QALGGHRTSH KKAKTIVEEK KSTADSENHD  420
HHYHQDEETS NKINITTPTQ IVNKGNSHGN FNSKPKIHEC SICGAEFSSG QALGGHMRRH  480
RPPPTITATN STKVTDETTS ESSHNDDENS NKEKPRIILS LDLNLPAPPE DDSKFGFSAN  540
KQSLVFSSAA LVDCHY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019264377.11e-175PREDICTED: zinc finger protein ZAT5-like
TrEMBLA0A314L4K61e-173A0A314L4K6_NICAT; Zinc finger protein zat5
STRINGXP_009776555.11e-166(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12622480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.12e-48C2H2 family protein