PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf04339g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bHLH | ||||||||
Protein Properties | Length: 244aa MW: 27000.9 Da PI: 7.8406 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 33.8 | 5.9e-11 | 80 | 127 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ rE+ RR+++N++f eL ll + + +K +K++iL A++ + +L Niben101Scf04339g00001.1 80 SKACREKLRREKLNDKFMELGALLEPG---RTPKTDKSAILVDAIRMVTHL 127 6789**********************9...8****************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.659 | 76 | 127 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.70E-8 | 79 | 132 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.0E-11 | 80 | 150 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.06E-12 | 80 | 146 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.4E-8 | 80 | 127 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.1E-8 | 82 | 133 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MASPETTSWL YEYNFEDTTV SVDPNFSNST SGFSWSMQPF NGSTTNFSVD IDGSIGESDC 60 LKVSGSKKRA RAESCTSSSS KACREKLRRE KLNDKFMELG ALLEPGRTPK TDKSAILVDA 120 IRMVTHLRCE AEKLKDLNLN LQEKIKELKA SICYILPIAE KNELRDEKQR LKVDKEKLEQ 180 QLKTMNAQPS FLPPLVPGAF AAPGQAAGSK LVPIISYPGV AMWQFMPPAA VDTSQDHVLR 240 PPVA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Plays a role in resistance to amide-linked indole-3-acetic acid (IAA) conjugates such as IAA-Leu and IAA-Phe. May regulate gene expression in response to metal homeostasis changes. {ECO:0000269|PubMed:17028341}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009792846.1 | 1e-162 | PREDICTED: transcription factor ILR3-like | ||||
Refseq | XP_016487244.1 | 1e-162 | PREDICTED: transcription factor ILR3-like | ||||
Swissprot | Q9FH37 | 1e-101 | ILR3_ARATH; Transcription factor ILR3 | ||||
TrEMBL | A0A1S4BEC4 | 1e-160 | A0A1S4BEC4_TOBAC; transcription factor ILR3-like | ||||
TrEMBL | A0A1U7XT92 | 1e-160 | A0A1U7XT92_NICSY; transcription factor ILR3-like | ||||
STRING | XP_009792846.1 | 1e-161 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA950 | 24 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G54680.1 | 3e-96 | bHLH family protein |