PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf04337g01005.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 297aa    MW: 32239.7 Da    PI: 4.8574
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf04337g01005.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.31.6e-1781130255
                       AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                y GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+ +++g
  Niben101Scf04337g01005.1  81 SYVGVRKRA-WGKWVSEIREPKK---KSRIWLGTFATPEMAARAHDVAAMSIKG 130
                               79****887.**********854...6**********************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.1E-1280130IPR001471AP2/ERF domain
CDDcd000183.00E-3080138No hitNo description
Gene3DG3DSA:3.30.730.106.0E-3081139IPR001471AP2/ERF domain
SMARTSM003804.9E-3481144IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-2081139IPR016177DNA-binding domain
PROSITE profilePS5103222.28681138IPR001471AP2/ERF domain
PRINTSPR003678.0E-98293IPR001471AP2/ERF domain
PRINTSPR003678.0E-9104120IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MAEPTTPNSE SESSSYNSCS LSSTISSSFV LIKNINSKNR LKRCREEEEE NDGQTNMSKS  60
SNSSTKKNGG NKSSDGSKHP SYVGVRKRAW GKWVSEIREP KKKSRIWLGT FATPEMAARA  120
HDVAAMSIKG GSAILNFPQL VDLLPRPVTC SPRDVQAAAV KAAHMDHLNP TESSPAASMT  180
SSSSSLSLVS GITSSSLCDD ESTPAESEAE IPPPPPAAAI LAPQHEELSE IVKLPKLDTS  240
YDSVESTQEV LRFIESDWWD YGTNCEYYFG GENINVGFTT GLEAVVSNSF ESFLWQN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1876143977Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009620060.11e-171PREDICTED: ethylene-responsive transcription factor TINY-like
TrEMBLA0A1S4BWP71e-164A0A1S4BWP7_TOBAC; ethylene-responsive transcription factor TINY-like
STRINGXP_009620060.11e-170(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21224225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.12e-46ERF family protein