PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf04328g00009.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 587aa    MW: 64306.4 Da    PI: 4.9036
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf04328g00009.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS450.21.4e-1372195841374
                      GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs 85 
                               lv++L++cAea+++++++la+alL+++  la +++ +m+++a+yf+eALa++++r    ly    ps+ ++   ++ l++   f+
  Niben101Scf04328g00009.1 219 LVHTLMACAEAIQQEKMKLAEALLKQIGFLAVSQAGAMRKVATYFAEALARKVYR----LY----PSNPNDPAFTDLLQM--HFY 293
                               689****************************************************....44....444443334555444..5** PP

                      GRAS  86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAe 170
                               e++P+lkf+h+taNqaIlea++++++vH+iDf+++qG+QWpaLlqaLa Rp+g+p++R+Tg+g+p++++++ l+++g++La++Ae
  Niben101Scf04328g00009.1 294 ETCPYLKFAHFTANQAILEAFANKNKVHVIDFSMKQGMQWPALLQALALRPGGAPTFRLTGIGPPSQDNTDHLQQVGWKLAQLAE 378
                               ************************************************************************************* PP

                      GRAS 171 elgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFle 255
                               +++v+fef+ +va++l+dl+ +++++++gE++aVn++++lh+ll+ ++ +e+    vL++vk+l+P+++++veqea+hn++ F++
  Niben101Scf04328g00009.1 379 SINVEFEFRGFVANTLADLDASMFDIREGETVAVNSMFELHQLLATPGGIEK----VLSFVKDLKPEIFTIVEQEANHNGPVFMD 459
                               ********************************************99999999....***************************** PP

                      GRAS 256 rflealeyysalfdsleak.....lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaak 335
                               rf+e+l+yys+lfdsle       l++ +++++ +++++lgr+i+n+v+ceg +r+erhetl++Wr r+++aGF+pv+l+++a k
  Niben101Scf04328g00009.1 460 RFTESLHYYSTLFDSLEGCggggeLGPVTDQDKLMSEVYLGRQICNLVSCEGGDRVERHETLAQWRTRFKSAGFEPVHLGSNAFK 544
                               ****************8875666688888******************************************************** PP

                      GRAS 336 qaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                               qa++ll+ ++   gyrvee++g+l+lgW++r+L+++SaW+
  Niben101Scf04328g00009.1 545 QASMLLALFAgRGGYRVEESNGCLMLGWHTRALIATSAWK 584
                               **********7777*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512576129No hitNo description
SMARTSM011292.0E-3244117No hitNo description
PfamPF120411.1E-3244110IPR021914Transcriptional factor DELLA, N-terminal
PROSITE profilePS5098566.48193563IPR005202Transcription factor GRAS
PfamPF035144.8E-135219584IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0010218Biological Processresponse to far red light
GO:0042176Biological Processregulation of protein catabolic process
GO:0042538Biological Processhyperosmotic salinity response
GO:2000033Biological Processregulation of seed dormancy process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 587 aa     Download sequence    Send to blast
MKREQTVPYV QQEDSFSGGC SSAAGGGGCS GKGKMWEEDV GVDDELLAVL GYKVKASDMA  60
GVAQKLQQLE EVMGSVEQDN LSFLASETVH YNPSDLSSWL ESMISELNPP DPFSNSSSSF  120
TTNQVYEDSS SFDSDLTAIP GKAVFPQIEN PAHEPQVQQP QSKRFKPSTT TELSSPSSSS  180
TSVGGGMRRS FQSESISTRP AESTRPVVLV DSQDNGVRLV HTLMACAEAI QQEKMKLAEA  240
LLKQIGFLAV SQAGAMRKVA TYFAEALARK VYRLYPSNPN DPAFTDLLQM HFYETCPYLK  300
FAHFTANQAI LEAFANKNKV HVIDFSMKQG MQWPALLQAL ALRPGGAPTF RLTGIGPPSQ  360
DNTDHLQQVG WKLAQLAESI NVEFEFRGFV ANTLADLDAS MFDIREGETV AVNSMFELHQ  420
LLATPGGIEK VLSFVKDLKP EIFTIVEQEA NHNGPVFMDR FTESLHYYST LFDSLEGCGG  480
GGELGPVTDQ DKLMSEVYLG RQICNLVSCE GGDRVERHET LAQWRTRFKS AGFEPVHLGS  540
NAFKQASMLL ALFAGRGGYR VEESNGCLML GWHTRALIAT SAWKLSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A5e-6322658326378Protein SCARECROW
5b3h_A5e-6322658325377Protein SCARECROW
5b3h_D5e-6322658325377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00611ChIP-seqTransfer from AT2G01570Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009789076.10.0PREDICTED: DELLA protein GAI1-like
SwissprotQ8S4W70.0GAI1_VITVI; DELLA protein GAI1
TrEMBLA0A1U7XHE40.0A0A1U7XHE4_NICSY; DELLA protein GAI1-like
STRINGXP_009789076.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21262462
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.10.0GRAS family protein