PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf04294g05013.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Nin-like

Protein Properties

Length: 506aa MW: 55808.3 Da PI: 7.8085

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf04294g05013.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.7	2.8e-29	187	237	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isl++l++yF++++kdAAk++gvc+T+LKriCRq+GI RWP+Rkik++ Niben101Scf04294g05013.1 187 EKSISLQVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKV 237 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.427	176	257	IPR003035	RWP-RK domain
Pfam	PF02042	5.1E-25	190	237	IPR003035	RWP-RK domain
SuperFamily	SSF54277	3.05E-23	399	494	No hit	No description
Gene3D	G3DSA:3.10.20.240	2.2E-20	408	488	No hit	No description
Pfam	PF00564	2.3E-17	409	490	IPR000270	PB1 domain
SMART	SM00666	2.3E-23	409	491	IPR000270	PB1 domain
PROSITE profile	PS51745	21.054	409	491	IPR000270	PB1 domain
CDD	cd06407	1.61E-36	410	490	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 506 aa Download sequence Send to blast
MFGLCSAVAI RLRSIYTGSA DFVLEFFLPL DCKNTEDQNQ MLSSLSSVIQ QSCQSLRVVT 60 DQELQEEKEL LQRGKVSLSA GESHEEISRK PVSPPYRDQD ASSWLSQMMD VQRKGKGAAV 120 SQEENFKVAA NHWRESIHAS TYSEPNQIQD NFGPKGGSGG SLDFSSGTGS HSSGAKRAGE 180 RRRSKTEKSI SLQVLRQYFA GSLKDAAKSI GVCPTTLKRI CRQHGITRWP SRKIKKVGHS 240 LQKLQLVIDS VHGAEGAIKL SSFYTNFPEL TSPNNPGTSN LSASKNHDHV QQVNTQPDGS 300 TLSPDTTTSK STSSSGSHNS SSSLFCSTGS KHLFPVTNVF ATGNATMEEH PGGMLKRAHT 360 EAELHDVGQE ETKLFVRSQS QKIQSNHNSL EPLCPLPTSS NQVIQDSATF KVKATFGKEK 420 IRFSLQSHWG FIDVLQEVLR RFNIEDGKID LKYFDDDDEW VLLTCDDDLE ECIDIHRICK 480 RRTIKVSLHH AYNPNLGSSF GSSGPA

Sequence ? help Back to Top

Protein Sequence Length: 506 aa Download sequence Send to blast

MFGLCSAVAI RLRSIYTGSA DFVLEFFLPL DCKNTEDQNQ MLSSLSSVIQ QSCQSLRVVT  60
DQELQEEKEL LQRGKVSLSA GESHEEISRK PVSPPYRDQD ASSWLSQMMD VQRKGKGAAV  120
SQEENFKVAA NHWRESIHAS TYSEPNQIQD NFGPKGGSGG SLDFSSGTGS HSSGAKRAGE  180
RRRSKTEKSI SLQVLRQYFA GSLKDAAKSI GVCPTTLKRI CRQHGITRWP SRKIKKVGHS  240
LQKLQLVIDS VHGAEGAIKL SSFYTNFPEL TSPNNPGTSN LSASKNHDHV QQVNTQPDGS  300
TLSPDTTTSK STSSSGSHNS SSSLFCSTGS KHLFPVTNVF ATGNATMEEH PGGMLKRAHT  360
EAELHDVGQE ETKLFVRSQS QKIQSNHNSL EPLCPLPTSS NQVIQDSATF KVKATFGKEK  420
IRFSLQSHWG FIDVLQEVLR RFNIEDGKID LKYFDDDDEW VLLTCDDDLE ECIDIHRICK  480
RRTIKVSLHH AYNPNLGSSF GSSGPA

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019266405.1	0.0	PREDICTED: protein NLP2
Refseq	XP_019266406.1	0.0	PREDICTED: protein NLP2
TrEMBL	A0A314L0F8	0.0	A0A314L0F8_NICAT; Protein nlp2
STRING	XP_009623517.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1598	24	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35270.1	1e-119	Nin-like family protein