PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf04294g05003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Nin-like
Protein Properties Length: 569aa    MW: 62805.1 Da    PI: 7.6162
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf04294g05003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK92.43.2e-29250300252
                    RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                               ek+isl++l++yF++++kdAAk++gvc+T+LKriCRq+GI RWP+Rkik++
  Niben101Scf04294g05003.1 250 EKSISLQVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKV 300
                               799**********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.427239320IPR003035RWP-RK domain
PfamPF020426.0E-25253300IPR003035RWP-RK domain
SuperFamilySSF542773.71E-23462557No hitNo description
Gene3DG3DSA:3.10.20.2402.6E-20471551No hitNo description
SMARTSM006662.3E-23472554IPR000270PB1 domain
PfamPF005642.7E-17472553IPR000270PB1 domain
PROSITE profilePS5174521.054472554IPR000270PB1 domain
CDDcd064071.52E-36473553No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 569 aa     Download sequence    Send to blast
LQTKTKTDEV CGNRADWVYA CSEHHLLKGE GVAGGSFNTN QPCFATDITA FSKTEYPLSH  60
HARMFGLCFA IAIRLRSIYT GSADFVLEFF LPLDCKNTED QNQMLSSLSS VIQQSCQSLR  120
VVTDQELQEE KELLQRGKVS LSAGESHEEI SRKPVSPPYR DQDASSWLSQ MMDVQRKGKG  180
AAVSQEENFK VAANHWRESI HASTYSEPNQ IQDNFGPKGG SGGSLDFSSG TGSHSSGAKR  240
AGERRRSKTE KSISLQVLRQ YFAGSLKDAA KSIGVCPTTL KRICRQHGIT RWPSRKIKKV  300
GHSLQKLQLV IDSVHGAEGA IKLSSFYTNF PELTSPNNPG TSNLSASKNH DHVQQVNTQP  360
DGSTLSPDTT TSKSTSSSGS HNSSSSLFCS TGSKHLFPVT NVFATGNATM EEHPGGMLKR  420
AHTEAELHDV GQEETKLFVR SQSQKIQSNH NSLEPLCPLP TSSNQVIQDS ATFKVKATFG  480
KEKIRFSLQS HWGFIDVLQE VLRRFNIEDG KIDLKYFDDD DEWVLLTCDD DLEECIDIHR  540
ICKRRTIKVS LHHAYNPNLG SSFGSSGPA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019266405.10.0PREDICTED: protein NLP2
RefseqXP_019266406.10.0PREDICTED: protein NLP2
TrEMBLA0A314L0F80.0A0A314L0F8_NICAT; Protein nlp2
STRINGXP_009623517.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15982467
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35270.11e-141Nin-like family protein