PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf04294g05003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | Nin-like | ||||||||
Protein Properties | Length: 569aa MW: 62805.1 Da PI: 7.6162 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 92.4 | 3.2e-29 | 250 | 300 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isl++l++yF++++kdAAk++gvc+T+LKriCRq+GI RWP+Rkik++ Niben101Scf04294g05003.1 250 EKSISLQVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKV 300 799**********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.427 | 239 | 320 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 6.0E-25 | 253 | 300 | IPR003035 | RWP-RK domain |
SuperFamily | SSF54277 | 3.71E-23 | 462 | 557 | No hit | No description |
Gene3D | G3DSA:3.10.20.240 | 2.6E-20 | 471 | 551 | No hit | No description |
SMART | SM00666 | 2.3E-23 | 472 | 554 | IPR000270 | PB1 domain |
Pfam | PF00564 | 2.7E-17 | 472 | 553 | IPR000270 | PB1 domain |
PROSITE profile | PS51745 | 21.054 | 472 | 554 | IPR000270 | PB1 domain |
CDD | cd06407 | 1.52E-36 | 473 | 553 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 569 aa Download sequence Send to blast |
LQTKTKTDEV CGNRADWVYA CSEHHLLKGE GVAGGSFNTN QPCFATDITA FSKTEYPLSH 60 HARMFGLCFA IAIRLRSIYT GSADFVLEFF LPLDCKNTED QNQMLSSLSS VIQQSCQSLR 120 VVTDQELQEE KELLQRGKVS LSAGESHEEI SRKPVSPPYR DQDASSWLSQ MMDVQRKGKG 180 AAVSQEENFK VAANHWRESI HASTYSEPNQ IQDNFGPKGG SGGSLDFSSG TGSHSSGAKR 240 AGERRRSKTE KSISLQVLRQ YFAGSLKDAA KSIGVCPTTL KRICRQHGIT RWPSRKIKKV 300 GHSLQKLQLV IDSVHGAEGA IKLSSFYTNF PELTSPNNPG TSNLSASKNH DHVQQVNTQP 360 DGSTLSPDTT TSKSTSSSGS HNSSSSLFCS TGSKHLFPVT NVFATGNATM EEHPGGMLKR 420 AHTEAELHDV GQEETKLFVR SQSQKIQSNH NSLEPLCPLP TSSNQVIQDS ATFKVKATFG 480 KEKIRFSLQS HWGFIDVLQE VLRRFNIEDG KIDLKYFDDD DEWVLLTCDD DLEECIDIHR 540 ICKRRTIKVS LHHAYNPNLG SSFGSSGPA |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019266405.1 | 0.0 | PREDICTED: protein NLP2 | ||||
Refseq | XP_019266406.1 | 0.0 | PREDICTED: protein NLP2 | ||||
TrEMBL | A0A314L0F8 | 0.0 | A0A314L0F8_NICAT; Protein nlp2 | ||||
STRING | XP_009623517.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1598 | 24 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35270.1 | 1e-141 | Nin-like family protein |