PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf04294g05002.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Nin-like

Protein Properties

Length: 327aa MW: 35966.4 Da PI: 9.077

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf04294g05002.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	93.5	1.5e-29	252	302	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isl++l++yF++++kdAAk++gvc+T+LKriCRq+GI RWP+Rkik++ Niben101Scf04294g05002.1 252 EKSISLQVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKV 302 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.427	241	322	IPR003035	RWP-RK domain
Pfam	PF02042	2.8E-25	255	302	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
MNLQTKTKTD EVCGNRADWV YACSEHHLLK GEGVAGGSFN TNQPCFATDI TAFSKTEYPL 60 SHHARMFGLC SAVAIRLRSI YTGSADFVLE FFLPLDCKNT EDQNQMLSSL SSVIQQSCQS 120 LRVVTDQELQ EEKELLQRGK VSLSAGESHE EISRKPVSPP YRDQDASSWL SQMMDVQRKG 180 KGAAVSQEEN FKVAANHWRE SIHASTYSEP NQIQDNFGPK GGSGGSLDFS SGTGSHSSGA 240 KRAGERRRSK TEKSISLQVL RQYFAGSLKD AAKSIGVCPT TLKRICRQHG ITRWPSRKIK 300 KVGHSLQKLQ LVIDSVHGAE GAIKLSS

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019266405.1	0.0	PREDICTED: protein NLP2
Refseq	XP_019266406.1	0.0	PREDICTED: protein NLP2
Swissprot	Q10S83	1e-94	NLP1_ORYSJ; Protein NLP1
TrEMBL	A0A314L0F8	0.0	A0A314L0F8_NICAT; Protein nlp2
STRING	XP_009623517.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1598	24	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35270.1	2e-88	Nin-like family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]