PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf04271g00003.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family CO-like
Protein Properties Length: 359aa    MW: 40831.7 Da    PI: 7.587
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf04271g00003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.63.9e-061646232
                  zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClle 32
                              ++r C+ ++e+ + l+C+ +++ lC +C  e
  Niben101Scf04271g00003.1 16 QKRLCDFCGENTALLYCRADSTKLCLSCDRE 46
                              6899************************875 PP
2zf-B_box16.81.4e-0562101842
                  zf-B_box   8 eHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                               ++++ ++++ C ++++ +C++C  e+H +      H+++pl
  Niben101Scf04271g00003.1  62 LCDSSPASILCCTDSCVFCQNCDWESH-NlsispaHERRPL 101
                               599999*********************.6688999988775 PP
3CCT60.84.5e-21295337143
                       CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 
                               Re a++RYkeK+ktR++eK+irY sRK++AesR R+KGrF+k 
  Niben101Scf04271g00003.1 295 RETAVSRYKEKKKTRRYEKHIRYVSRKVRAESRTRIKGRFAKM 337
                               99***************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003363.1E-101562IPR000315B-box-type zinc finger
PROSITE profilePS501199.3281562IPR000315B-box-type zinc finger
CDDcd000217.65E-71859No hitNo description
CDDcd000210.0056663101No hitNo description
PROSITE profilePS5101714.515295337IPR010402CCT domain
PfamPF062032.8E-15295337IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MTELKEDQEE QNQQPQKRLC DFCGENTALL YCRADSTKLC LSCDREVYST NQLFTKHTRW  60
LLCDSSPASI LCCTDSCVFC QNCDWESHNL SISPAHERRP LEDLGKKALL YRDSVTSDGG  120
GYGFSDWLVW DTPSVVSLDD LIAPNDSSHN FQAIGVPPLP KNRNAACGNA RKKYLVSFVN  180
YQRWNQILFM EPAQNRHLGF KGSGFMQNSE HAVVPSAEGS AFNWCNDTGG FTNQGFSSSL  240
ADCFIETKCL LADRDLDVGD ASGGANEEQS HNPPVAETFQ MVPKIAHREL NNQERETAVS  300
RYKEKKKTRR YEKHIRYVSR KVRAESRTRI KGRFAKMDMH QKSSFRSISP GYETRYDIR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009791543.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 13 isoform X2
RefseqXP_016509923.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 13-like
TrEMBLA0A1S4D9640.0A0A1S4D964_TOBAC; zinc finger protein CONSTANS-LIKE 13-like
TrEMBLA0A1U7XKY80.0A0A1U7XKY8_NICSY; zinc finger protein CONSTANS-LIKE 13 isoform X2
STRINGXP_009791542.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA73622228
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47890.14e-59B-box type zinc finger protein with CCT domain