PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf04260g01006.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | C2H2 | ||||||||
Protein Properties | Length: 223aa MW: 24246 Da PI: 9.0705 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.2 | 0.00027 | 187 | 208 | 3 | 23 |
ETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 3 CpdCgksFsrksnLkrHirt.H 23 C+ C+++F + L++H + H Niben101Scf04260g01006.1 187 CKTCNRTFGSETALESHSKAkH 208 *****************88777 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 10.97 | 185 | 213 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 5.3E-6 | 187 | 209 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 187 | 208 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MVVSTSLDTR QLTHMSRRKM KKMKMSLMRK YPLLLPTLVR KIVLPTRQTG KAEAKASAND 60 STSDKQKVKI AEPSKDAKAD DEDDSSDEDD TSEDEEDSEM GEDEDDSDED KSDEETPKKA 120 EPSKKRPADS ATRTPAPDKK AKFATPQKAD GKKGAVHVAT PHPSKQAGKT PGNKSNQTPK 180 SGGSLACKTC NRTFGSETAL ESHSKAKHSA GKSHVFFKDV VSV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Mediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events (By similarity). {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By fertilization. {ECO:0000269|PubMed:15082924}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009791895.1 | 2e-96 | PREDICTED: histone deacetylase HDT1-like isoform X2 | ||||
Swissprot | Q6V9I6 | 3e-38 | HDT1_SOLCH; Histone deacetylase HDT1 | ||||
TrEMBL | A0A1U7XZF3 | 4e-95 | A0A1U7XZF3_NICSY; histone deacetylase HDT1-like isoform X2 | ||||
STRING | XP_009791887.1 | 4e-74 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3176 | 18 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03740.1 | 3e-22 | histone deacetylase 2C |
Publications ? help Back to Top | |||
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