PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf04240g02010.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 213aa    MW: 25156.5 Da    PI: 6.5632
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf04240g02010.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox611.8e-1955107456
                               -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                  Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                               ++++++eq++ Le+ F k++++  e++ +LA +lgL+ rqV vWFqNrRa++k
  Niben101Scf04240g02010.1  55 KRKLSEEQVNLLEQSFGKEHKLESERKDKLAYELGLDPRQVAVWFQNRRARWK 107
                               45899***********************************************9 PP
2HD-ZIP_I/II119.51.7e-3854145293
               HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekevee 86 
                               +kr+ls+eqv+lLE+sF +e+kLe+erK +la eLgl+prqvavWFqnrRAR+k+k+lE++y++Lk+++d+   +++rLe+ev +
  Niben101Scf04240g02010.1  54 RKRKLSEEQVNLLEQSFGKEHKLESERKDKLAYELGLDPRQVAVWFQNRRARWKSKKLEEEYSKLKTEHDTNIVDKCRLENEVLK 138
                               8************************************************************************************ PP

               HD-ZIP_I/II  87 Lreelke 93 
                               L+e+l+e
  Niben101Scf04240g02010.1 139 LKEQLSE 145
                               ****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.95749109IPR001356Homeobox domain
SMARTSM003893.3E-1852113IPR001356Homeobox domain
SuperFamilySSF466892.74E-1854117IPR009057Homeodomain-like
CDDcd000861.57E-1554110No hitNo description
PfamPF000461.3E-1655107IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.3E-2056116IPR009057Homeodomain-like
PRINTSPR000312.5E-58089IPR000047Helix-turn-helix motif
PROSITE patternPS00027084107IPR017970Homeobox, conserved site
PRINTSPR000312.5E-589105IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MIMRSSMNLQ VDDQMLLISQ YYPGIYTQEL PQQGEAKPRR RRKKNKGESS GIMRKRKLSE  60
EQVNLLEQSF GKEHKLESER KDKLAYELGL DPRQVAVWFQ NRRARWKSKK LEEEYSKLKT  120
EHDTNIVDKC RLENEVLKLK EQLSEAEKEI QRLLMERCDG FNSSNSPTTS SLSMETPFLG  180
DFGMEGFDNT FYVPENTYSQ GLEWVNLYMP YDM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13956RRRKKNKGESSGIMRKRK
24156RKKNKGESSGIMRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00473DAPTransfer from AT4G36740Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016504930.11e-130PREDICTED: homeobox-leucine zipper protein ATHB-40-like
SwissprotO232086e-77ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40
TrEMBLA0A1S4CUX71e-128A0A1S4CUX7_TOBAC; homeobox-leucine zipper protein ATHB-40-like
STRINGXP_009775418.11e-128(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12892480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.13e-68homeobox protein 40
Publications ? help Back to Top
  1. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]