PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf04225g00006.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 585aa    MW: 66405.8 Da    PI: 8.3568
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf04225g00006.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.54.9e-16106152148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                               +g WT eEd +l+++vkq+G + W+ Ia++m   R +kqc++rw+++l
  Niben101Scf04225g00006.1 106 KGQWTDEEDRKLLRLVKQFGVRKWSQIAEKMD-VRAGKQCRERWHNHL 152
                               799*****************************.9************97 PP
2Myb_DNA-binding50.54.9e-16256302148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                               +g WT eEd +l+++vkq+G + W+ Ia++m   R +kqc++rw+++l
  Niben101Scf04225g00006.1 256 KGQWTDEEDRKLLRLVKQFGVRKWSQIAEKMD-VRAGKQCRERWHNHL 302
                               799*****************************.9************97 PP
3Myb_DNA-binding56.85.3e-18308350145
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                               ++ W++eE++ lv+a+kqlG++ W+ Ia+++  gRt++++k++w+
  Niben101Scf04225g00006.1 308 KDTWSEEEELMLVEAHKQLGNK-WAEIAKRIR-GRTENSIKNHWN 350
                               679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.028101156IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.5E-21105153IPR009057Homeodomain-like
SMARTSM007173.8E-14105154IPR001005SANT/Myb domain
SuperFamilySSF466891.86E-15106157IPR009057Homeodomain-like
CDDcd001679.92E-14109152No hitNo description
PfamPF139212.3E-14109156No hitNo description
PROSITE profilePS5129426.031251306IPR017930Myb domain
SMARTSM007172.9E-15255304IPR001005SANT/Myb domain
SuperFamilySSF466893.12E-28255349IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-25257308IPR009057Homeodomain-like
CDDcd001679.92E-14259302No hitNo description
PfamPF139219.2E-20259318No hitNo description
PROSITE profilePS5129418.562307357IPR017930Myb domain
SMARTSM007172.7E-16307355IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.6E-20309355IPR009057Homeodomain-like
CDDcd001673.05E-12310353No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 585 aa     Download sequence    Send to blast
MEGGSSAFRP YQNLPKIYLG STPPFTAIDR FLLSHENYFY PLSSNSSCSS HASGVSWPKS  60
LPEPSFIEGF FLNEQGNDLI EDAKSVQKNI SESGKKAKET TTYLVKGQWT DEEDRKLLRL  120
VKQFGVRKWS QIAEKMDVRA GKQCRERWHN HLRGSSAFRP YQNLPKIYLG STPPFTAIDR  180
FLLSHENYFY PLSSNSSCSS HASGVSWPKS LPEPSFIEGF FLNEQGNDLI EDAKSVQKNI  240
SESGKKAKET TTYLVKGQWT DEEDRKLLRL VKQFGVRKWS QIAEKMDVRA GKQCRERWHN  300
HLRPDIKKDT WSEEEELMLV EAHKQLGNKW AEIAKRIRGR TENSIKNHWN ATKRRMNSRR  360
DKKRKNQQHG QNERKNGSNI LQGYIRSVCF AVESPLTTAT YHDGGGSGGG GEYNSTTTTT  420
VTQSNSTITN ATLTYSDDDS PSLLTHQTCD EEMNFMQNLF GKNSFLSDNN GTKAIDHSME  480
AKVTQNLFDN NSSISNSAFN SFGENPLSKA QLQYSQHFYP DVYLPHLLDG SSYNPDCIEY  540
GNTMNMQMNR ATGCSSGGNN KVEVDLMELV SYSHFSQGTY NNTFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-401043555106B-MYB
1mse_C3e-401043552103C-Myb DNA-Binding Domain
1msf_C3e-401043552103C-Myb DNA-Binding Domain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1352363KRRMNSRRDKKR
2358364RRDKKRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016435339.10.0PREDICTED: transcriptional activator Myb-like
TrEMBLA0A1S3X5Z30.0A0A1S3X5Z3_TOBAC; transcriptional activator Myb-like
STRINGXP_009626870.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA48251941
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58850.11e-60myb domain protein 119