PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf04218g00013.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family AP2
Protein Properties Length: 301aa    MW: 34172.5 Da    PI: 9.4937
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf04218g00013.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.82.3e-1252108155
                       AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                               s y+GV++++++gr++A+++d  ++n  ++k+ + g ++ +e Aa a++ a++k++g
  Niben101Scf04218g00013.1  52 SIYRGVTRHRWTGRYEAHLWDkNCWNEtQNKKGRQGAYDDEETAAHAYDLAALKYWG 108
                               57*******************99999998988888********************98 PP
2AP241.53.3e-13140185755
                       AP2   7 rwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                               r+++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  Niben101Scf04218g00013.1 140 RRHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 185
                               89999*******99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.07E-1552117IPR016177DNA-binding domain
PfamPF008473.0E-852108IPR001471AP2/ERF domain
CDDcd000185.61E-1552118No hitNo description
Gene3DG3DSA:3.30.730.106.1E-1353116IPR001471AP2/ERF domain
SMARTSM003803.1E-2053122IPR001471AP2/ERF domain
PROSITE profilePS5103218.6153116IPR001471AP2/ERF domain
PRINTSPR003673.1E-65465IPR001471AP2/ERF domain
PROSITE profilePS5103216.871134193IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-15135195IPR016177DNA-binding domain
PfamPF008472.3E-9140185IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-15141194IPR001471AP2/ERF domain
SMARTSM003803.6E-20141199IPR001471AP2/ERF domain
CDDcd000181.93E-19141195No hitNo description
PRINTSPR003673.1E-6175195IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MAKTSKCNQK NGTTTTTTSS SSSSNKGDGN AIGKAKRTRK SVPRDSPPQR SSIYRGVTRH  60
RWTGRYEAHL WDKNCWNETQ NKKGRQGAYD DEETAAHAYD LAALKYWGQD TILNFPVLTY  120
EKELKEMEGQ SKEEYIGSLR RHHHNGRWEA RIGRVFGNKY LYLGTYATQE EAATAYDMAA  180
IEYRGLNAVT NFDLSRYIKW LRPSNQINPS DNTEPNPNPN ADDIHSMPNT KEKMEFSFLQ  240
HQQQQQSSNS DSTAVALPCP AASATXFVSS NSNSNNNKAR TPMQQMWRCH VQLSALQLHL  300
H
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009757386.11e-162PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060
RefseqXP_016483746.11e-162PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN45e-87AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A1S4B4H31e-161A0A1S4B4H3_TOBAC; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A1U7UX981e-161A0A1U7UX98_NICSY; AP2-like ethylene-responsive transcription factor At1g16060
STRINGXP_009757386.11e-161(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18152464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.13e-81ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]