PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf04217g07002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 201aa    MW: 21698 Da    PI: 4.4615
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf04217g07002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.62.4e-163886255
                       AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                               ++G+r++  +g+Wv+eIr+p++   ++r++lg+f t+e+Aa+a++ a+++l+g
  Niben101Scf04217g07002.1 38 NFRGIRQR--NGKWVSEIREPRK---TTRIWLGTFSTPEMAAAAYDVAALALKG 86
                              589**975..6*********843...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.3E-103786IPR001471AP2/ERF domain
CDDcd000187.27E-183796No hitNo description
SMARTSM003804.2E-2938100IPR001471AP2/ERF domain
PROSITE profilePS5103219.6253894IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.2E-273896IPR001471AP2/ERF domain
SuperFamilySSF541715.3E-183996IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MADHFCNITP SDNPPPSENF SPTGSASGNV LSPRRHPNFR GIRQRNGKWV SEIREPRKTT  60
RIWLGTFSTP EMAAAAYDVA ALALKGPDVP LNFPDSAYSY PIPASLSATD IRAAATNAAA  120
ARAPPISESN SHEVLAEPGN YEGASTTVAA TFVDEEEIFG MPKLLDEMAE AMLVSPPRMH  180
QSTSYDESPE NSDADSLWSY P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-1336941272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019246710.11e-121PREDICTED: ethylene-responsive transcription factor ERF027-like
SwissprotQ9FJ902e-50ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLA0A1J6IGI31e-120A0A1J6IGI3_NICAT; Ethylene-responsive transcription factor erf025
STRINGXP_009792399.11e-120(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA55322110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.12e-42ERF family protein
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]