PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf04206g02010.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 544aa    MW: 59565.9 Da    PI: 5.3639
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf04206g02010.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.34.4e-16306352455
                               HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                       HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                hn  ErrRRdriN+++  L+el+P +      K +Ka++L +A+eY+ksLq
  Niben101Scf04206g02010.1 306 VHNLSERRRRDRINEKMKALQELIPRC-----NKSDKASMLDEAIEYLKSLQ 352
                               6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.75E-19300360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.146302351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.89E-17305356No hitNo description
Gene3DG3DSA:4.10.280.101.9E-20306356IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-13306352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.0E-17308357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    Send to blast
MNHSVPDFEM DDDYPNIPKT SGITTPSKKS TVMDEDIIEL IWQNGQIIAQ SQNQRSQTVA  60
ASAPPIFIQE DEMATWLQYP LDDSSFERDL YADFLYTKPS SSIVTAAVPP PGEIVTTTAE  120
IRPNQPPPQL RCTEGQFLHS IQNFGHFSRL PRAKSQNYTS SSGNTATVST IVDSSETPIA  180
EFSRVSDKVA PVSAGNDEGK ATTDTTTTTT AETTSGGETS TTACEFTGTS SASGSRGSLS  240
ASADPPPLQP PQEAALIPAE DRKRKGREKG TEDKEEHRED AEFESADAKK QTSSSTSTKR  300
SRAAEVHNLS ERRRRDRINE KMKALQELIP RCNKSDKASM LDEAIEYLKS LQMQVQHGPY  360
DVSWSPAIHA NDGNGYAYGD SMVPMMYPGV PQYMPTMGMG MRMGIGTGTG MSRPMVPYPS  420
LVPDLAMQNA AAVAQMTPRF PVPAYHLPSV PVPDPSRIVA ANQPDHPIMN SLVGHNTNQP  480
RLPNLSDPYQ QYYALHQAQN QRAEQPSSSN PSSRIEESPA NHQTGTNNWK QKQREKSTGS  540
RSLE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1310315ERRRRD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016488551.10.0PREDICTED: transcription factor PIF1-like
TrEMBLA0A1S4BI580.0A0A1S4BI58_TOBAC; transcription factor PIF1-like
STRINGXP_009597633.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40592341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.38e-53phytochrome interacting factor 3-like 5