PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf04193g05002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 276aa    MW: 31661.8 Da    PI: 4.7026
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf04193g05002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding582.2e-181461148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              rg+W++eEd+ll+++++++G ++W++ ++  g+ R++k+c++rw +yl
  Niben101Scf04193g05002.1 14 RGPWSKEEDDLLINYINKHGHPNWRALPKLAGLLRCGKSCRLRWTNYL 61
                              89******************************99************97 PP
2Myb_DNA-binding47.54.1e-1567110146
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                               rg++T+eE+  +v++++ lG++ W+ Ia++++ gRt++++k+ w++
  Niben101Scf04193g05002.1  67 RGNFTPEEENTIVKLHQVLGNR-WSGIAARLP-GRTDNEIKNIWHS 110
                               89********************.*********.*********9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.5E-25564IPR009057Homeodomain-like
PROSITE profilePS5129415.898961IPR017930Myb domain
SuperFamilySSF466895.03E-3011108IPR009057Homeodomain-like
SMARTSM007174.8E-151363IPR001005SANT/Myb domain
PfamPF002491.7E-161461IPR001005SANT/Myb domain
CDDcd001676.97E-111661No hitNo description
PROSITE profilePS5129424.37762116IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.2E-2565115IPR009057Homeodomain-like
SMARTSM007171.2E-1266114IPR001005SANT/Myb domain
PfamPF002491.4E-1367110IPR001005SANT/Myb domain
CDDcd001673.85E-869112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MGRAPCCEKL GLKRGPWSKE EDDLLINYIN KHGHPNWRAL PKLAGLLRCG KSCRLRWTNY  60
LRPDIKRGNF TPEEENTIVK LHQVLGNRWS GIAARLPGRT DNEIKNIWHS RLKKRVDDKS  120
QPQETQDIQD QQTMETSKSE ENLVTHSSEP ENSKDNSEEI SSPKTNSHIH EHPNSSSSIS  180
FSGDSCSNTT ATNMSTSSRA DESRDQIMLD NLLEVDDKFW SEVLWAPDET NDNNVSDLSF  240
SSLEENYELN SSLNDNWFWD DFFSTANEFM LEVPEL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-29121175109B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009770485.10.0PREDICTED: myb-related protein Myb4-like
TrEMBLA0A1U7W8B20.0A0A1U7W8B2_NICSY; myb-related protein Myb4-like
STRINGXP_009770485.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06180.13e-72myb domain protein 13