PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf04190g00008.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family SRS
Protein Properties Length: 356aa    MW: 39187.8 Da    PI: 7.7373
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf04190g00008.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF70222.92.4e-0752129580
                    DUF702   5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathv.kstWvpaakrrer.qqqlaaasskaaasaaeaaskrkrelks 80 
                               + +C  CGn a+  C ++ C+ CC      C+ hv k      +k ++r  +   ++s++ a+ ++ +++ r+r+  +
  Niben101Scf04190g00008.1  52 KPKCIKCGNVARSRCPFQSCKSCCAKAQNPCHIHVlKGGSTLPDKSSHRgAASVRQLSTNFAQFNNLQTPLRSRKPLT 129
                               568*******************************94333333345555523333344444444444444444444433 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051421.4E-454119IPR007818Protein of unknown function DUF702
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MAAAASSPAL SNHSADSAPS PASASAAPTV TPAVVSSHPT INASKNLRGL NKPKCIKCGN  60
VARSRCPFQS CKSCCAKAQN PCHIHVLKGG STLPDKSSHR GAASVRQLST NFAQFNNLQT  120
PLRSRKPLTR KDAQLINEWR FMKLKEYRES NIAAENEAFD RYMQNVGLLE EVFAVNSAED  180
EKNEHGSTGD DNEATVNRLK LQLRSDATRI ENTRKRMQYI VDQGLRKLRK LDSGDNATDL  240
SDLDALGKKK KAQSAEAEWV VSFTDLIDKL NKARNEEDLK ACWQMKSQLF NQNNKEKQAE  300
SDNAEASIEL SSKASAMPTM PSGNSPPKWF STTTIDDDEL GQLNAQFDSL EDIEEL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009786844.10.0PREDICTED: uncharacterized protein LOC104234898 isoform X1
TrEMBLA0A1U7XIQ80.0A0A1U7XIQ8_NICSY; uncharacterized protein LOC104234898 isoform X1
STRINGXP_009786844.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA85441114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32730.13e-90