PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf04131g01007.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 120aa MW: 13637.7 Da PI: 10.0135 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 27.5 | 8e-09 | 8 | 33 | 27 | 52 |
AP2 27 krkrfslgkfgtaeeAakaaiaarkk 52 +++r++lg+f tae+Aa+a+++a + Niben101Scf04131g01007.1 8 RKTRIWLGTFETAEDAARAYDEASRL 33 259*******************9765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 12.194 | 1 | 44 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.5E-9 | 2 | 50 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.88E-12 | 7 | 46 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 7.6E-5 | 7 | 34 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.7E-19 | 8 | 44 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.44E-19 | 9 | 46 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 120 aa Download sequence Send to blast |
MVYYFACRKT RIWLGTFETA EDAARAYDEA SRLMCGQRAR TNFPYNQNMP QTSSSKLLSA 60 TLTAKLHKCY MASLQMPKTS AQHKIKSSHV NVPKNAPIQE NVAYEMKQQM VAPKQISIDT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009771670.1 | 2e-63 | PREDICTED: ethylene-responsive transcription factor ERF003-like | ||||
Refseq | XP_016497010.1 | 2e-63 | PREDICTED: ethylene-responsive transcription factor ERF003-like | ||||
Swissprot | Q94AW5 | 2e-36 | ERF03_ARATH; Ethylene-responsive transcription factor ERF003 | ||||
TrEMBL | A0A1S4C798 | 5e-62 | A0A1S4C798_TOBAC; ethylene-responsive transcription factor ERF003-like | ||||
TrEMBL | A0A1U7WBR6 | 5e-62 | A0A1U7WBR6_NICSY; ethylene-responsive transcription factor ERF003-like | ||||
STRING | XP_009771670.1 | 8e-63 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1362 | 24 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25190.1 | 3e-27 | ERF family protein |
Publications ? help Back to Top | |||
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