PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf04124g02002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 332aa    MW: 37573.9 Da    PI: 5.9529
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf04124g02002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.00042195217123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               y+C+ C+k F++   L  H  +H
  Niben101Scf04124g02002.1 195 YRCETCNKKFRSYQALGGHRASH 217
                               9***********99999998887 PP
2zf-C2H212.70.0004241263123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               ++Cp+C ++Fs+   L  H r+H
  Niben101Scf04124g02002.1 241 HECPICYRVFSSGQALGGHKRSH 263
                               79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.54527IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.037527IPR007087Zinc finger, C2H2
PROSITE patternPS000280727IPR007087Zinc finger, C2H2
PfamPF139121.2E-5728IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.346195222IPR007087Zinc finger, C2H2
SMARTSM003550.02195217IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.75E-8195263No hitNo description
PfamPF139121.6E-10195219IPR007087Zinc finger, C2H2
PROSITE patternPS000280197217IPR007087Zinc finger, C2H2
SMARTSM003550.19241263IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.307241263IPR007087Zinc finger, C2H2
PfamPF139121.2E-12241263IPR007087Zinc finger, C2H2
PROSITE patternPS000280243263IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MEKHKTCKLC SRKFANGRAL GGHMRSHMMN LYIQQQQKYH QISEETESIP SSSWSSEEEN  60
GEKSKILNLS DFSVEEAADD SVVLPDKESE TESSKNPTRS RRSKRVRKSS IINPNFVKVT  120
EYYSSLVETE PVSSISETSP EEDVAHCLMM LSRDKWIKQQ VDHYSDDDEE EEEYKEENSG  180
VQVKVITKNR GRGKYRCETC NKKFRSYQAL GGHRASHKKI KVSNYNNEVV ENVEVLEEKI  240
HECPICYRVF SSGQALGGHK RSHVIGASTA VANINVPVFI PTASKLEFSR NGGSLIDLNL  300
PPPMEELDDE IISQVEVSAV SDDAEFVNPI KH
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00416DAPTransfer from AT3G60580Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016507472.10.0PREDICTED: zinc finger protein ZAT9-like
TrEMBLA0A1S4D2280.0A0A1S4D228_TOBAC; zinc finger protein ZAT9-like
STRINGXP_009624701.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10952480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.14e-47C2H2-like zinc finger protein