PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf04113g17024.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 89aa    MW: 10329.8 Da    PI: 10.1064
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf04113g17024.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.82.9e-09347345
                              SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
           Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                              +WTt   +++ +a +++ ++   +W+ Iar++g g+++++++ ++ 
  Niben101Scf04113g17024.1  3 SWTTRKNKKFEEALALFDKEtpdRWHNIARCVG-GKSAEEVRRHYE 47
                              599999************99*************.**********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007176.8E-5152IPR001005SANT/Myb domain
PROSITE profilePS512939.978154IPR017884SANT domain
CDDcd001671.28E-6350No hitNo description
PfamPF002491.7E-6347IPR001005SANT/Myb domain
SuperFamilySSF466892.81E-12357IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.1E-4448IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 89 aa     Download sequence    Send to blast
MASWTTRKNK KFEEALALFD KETPDRWHNI ARCVGGKSAE EVRRHYELLV KDIMQIENGQ  60
VPLPNYKAVG SNSRGYANEQ RLLKNLKLQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-294891193RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019244969.13e-61PREDICTED: protein RADIALIS-like 3
SwissprotQ1A1733e-35RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A1J6J2A26e-60A0A1J6J2A2_NICAT; Protein radialis-like 6
STRINGXP_009771192.14e-60(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.21e-37RAD-like 6