PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf04106g03005.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 128aa    MW: 15099.2 Da    PI: 9.5591
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf04106g03005.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.38.6e-142272147
                              TSSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHTTTS-HHHHHHHHHHH CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.....tWktIartmgkgRtlkqcksrwqky 47
                              rg+++ eE+e++++++ +  +       W++Ia +++ gRt++++k++w++y
  Niben101Scf04106g03005.1 22 RGKFSFEEEEIIIQLHSRKSSLsifcsLWSAIATHLP-GRTDNEIKNYWNTY 72
                              89******************99***************.************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.426116IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.5E-10229IPR009057Homeodomain-like
SuperFamilySSF466891.61E-17381IPR009057Homeodomain-like
PROSITE profilePS5129416.361777IPR017930Myb domain
SMARTSM007173.0E-102175IPR001005SANT/Myb domain
PfamPF002497.4E-132272IPR001005SANT/Myb domain
CDDcd001671.67E-92473No hitNo description
Gene3DG3DSA:1.10.10.604.6E-183074IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 128 aa     Download sequence    Send to blast
LQRCGKSCRL RWTNYLRRDT KRGKFSFEEE EIIIQLHSRK SSLSIFCSLW SAIATHLPGR  60
TDNEIKNYWN TYIRKKLMKM GIDLLDFSYI LNPYNSSQSQ YFKIDGIATY EYTVKPSEPV  120
GQNNVQES
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A9e-1637737105MYB PROTO-ONCOGENE PROTEIN
1h8a_C2e-1537760128MYB TRANSFORMING PROTEIN
1mse_C9e-1637737105C-Myb DNA-Binding Domain
1msf_C9e-1637737105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in osmotic stress and wounding signaling pathways (Probable). Contributes to basal resistance against the herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:19517001, ECO:0000305|PubMed:12857823}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by light (PubMed:8980549). Induced by wounding, salt stress and abscisic acid (PubMed:12857823). Induced by the lepidopteran herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:12857823, ECO:0000269|PubMed:19517001, ECO:0000269|PubMed:8980549}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009783632.14e-52PREDICTED: transcription factor MYB39-like
SwissprotQ9LDR88e-39MY102_ARATH; Transcription factor MYB102
TrEMBLA0A1U7WUP39e-51A0A1U7WUP3_NICSY; transcription factor MYB39-like
STRINGXP_009783632.11e-51(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21440.14e-41MYB-like 102
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]
  4. Zhu L,Guo J,Ma Z,Wang J,Zhou C
    Arabidopsis Transcription Factor MYB102 Increases Plant Susceptibility to Aphids by Substantial Activation of Ethylene Biosynthesis.
    Biomolecules, 2019.
    [PMID:29880735]