PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf04096g09005.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 823aa    MW: 89350.3 Da    PI: 6.51
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf04096g09005.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.72.7e-20128183156
                               TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                  Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                               ++k +++t++q++eLe++F++n++p++++r eL k+l L+ rqVk+WFqNrR+++k
  Niben101Scf04096g09005.1 128 KKKYHRHTPYQIQELEAAFKENPHPDEKARLELGKRLTLESRQVKFWFQNRRTQMK 183
                               79999************************************************999 PP
2START165.24.7e-523365611206
                               HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT- CS
                     START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetl 76 
                               ela +a++el+k+a+ ++p+W++      e +n +e+ ++f++  +     ++ ea +a+g v  ++  lve+l+d++ +W e++
  Niben101Scf04096g09005.1 336 ELAFAAMNELLKLAEIGDPLWFRNFdgsgEALNLEEYARSFPPCIGmkpsnFTAEATKATGTVMINSLALVETLMDTS-RWVEMF 419
                               57899******************9999999*************99999*999**************************.****** PP

                               S....EEEEEEEECTT.......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESS CS
                     START  77 a....kaetlevissg.......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellp 149
                                    + +t++viss        g lql++ae+q+ls lvp R + f+R+++q+ +g w++vdvS+d  q+ ++  +   +++lp
  Niben101Scf04096g09005.1 420 ScivgRTSTIDVISSSstsgsrnGNLQLIQAEFQVLSALVPvRQVKFLRFCKQHAEGIWAVVDVSIDAIQEGSQPREAGNCRRLP 504
                               ************************************************************************998899999**** PP

                               EEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                     START 150 Sgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                               Sg+++++++ng+skv+w+eh++++++++h+ +r++++sg+ +ga++w atlqrqce+
  Niben101Scf04096g09005.1 505 SGCIVQDLPNGYSKVIWIEHMEYDENTIHNFYRPFIRSGRGFGAQRWIATLQRQCEC 561
                               *******************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.2E-22102187IPR009057Homeodomain-like
SuperFamilySSF466895.56E-20111185IPR009057Homeodomain-like
PROSITE profilePS5007117.734125185IPR001356Homeobox domain
SMARTSM003892.5E-16127189IPR001356Homeobox domain
CDDcd000861.51E-17128185No hitNo description
PfamPF000466.6E-18128183IPR001356Homeobox domain
PROSITE profilePS5084839.036327564IPR002913START domain
SuperFamilySSF559613.98E-28329561No hitNo description
CDDcd088751.85E-106331560No hitNo description
SMARTSM002341.3E-35336561IPR002913START domain
PfamPF018524.2E-45336561IPR002913START domain
SuperFamilySSF559611.19E-12606816No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 823 aa     Download sequence    Send to blast
MSFGGFIGSS SSGGNGGGDG GSGVSRVVAD SQYNNTMPTA ATIAHQSQQL VTSPLTQPMF  60
NSSPLSLALK PKMEGIGDMG LIGENFDAVA MGRSSREDEY ESRSGSDNLD GGASGDDQDT  120
PLGKSSRKKK YHRHTPYQIQ ELEAAFKENP HPDEKARLEL GKRLTLESRQ VKFWFQNRRT  180
QMKTQLERHE NAILKQENDK LRIENIAMKE AMRSPMCGHC GGQAILGEIH IEEHHLRIEN  240
ARLRDELNRI CVLANKFLGR PLGSFPGTMP PGMANSGLEL AVGRNGFGAL NSVDTALPIG  300
LDFGNGLSSP LTMMSPRPTP SMSSTDGSFD KSMLMELAFA AMNELLKLAE IGDPLWFRNF  360
DGSGEALNLE EYARSFPPCI GMKPSNFTAE ATKATGTVMI NSLALVETLM DTSRWVEMFS  420
CIVGRTSTID VISSSSTSGS RNGNLQLIQA EFQVLSALVP VRQVKFLRFC KQHAEGIWAV  480
VDVSIDAIQE GSQPREAGNC RRLPSGCIVQ DLPNGYSKVI WIEHMEYDEN TIHNFYRPFI  540
RSGRGFGAQR WIATLQRQCE CLAVIASSAV PSGDCAVVSP SGRRSIAMLA RRITRNFCGG  600
VCATFYKWEP IQTGTAEDTK LMMRKSIGDP GEPPGIVLSA TRTIWLPVTH QRLFDFLRNE  660
QTRSQWDVLS HGGPMHQIVH IAKGQDLGNS ISLFRANAAA SDANQNSMLI LQDSCTDVSG  720
SIVAYAAVDT AEMNVVVSGG DSSCVAFLPS GFAIVPDCFQ NSNNGMLEKE DNGGSSNGSL  780
LTLGFQILVN SLPAAKLTME SVNTVNALIS RTLQGIKTAF QCN
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269|PubMed:10402424}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019251816.10.0PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2-like isoform X2
SwissprotQ0WV120.0ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBLA0A1J6I2500.0A0A1J6I250_NICAT; Homeobox-leucine zipper protein roc5
STRINGXP_009774401.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16262465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]