PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf04071g00009.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB_related | ||||||||
Protein Properties | Length: 663aa MW: 74824.8 Da PI: 10.1486 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 32 | 3e-10 | 12 | 64 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrwqkyl 48 W+t+E++ll+ avk++G ++W+++a +++ +t+ ck+++++++ Niben101Scf04071g00009.1 12 TTWSTWEELLLAFAVKRHGLKDWESVAMELQsrsslpALLTAQICKDKYRDLR 64 68**********************************9889*********9886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.713 | 6 | 64 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-6 | 7 | 71 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.68E-7 | 7 | 72 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.7E-5 | 10 | 66 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.3E-8 | 11 | 63 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.64E-5 | 14 | 63 | No hit | No description |
SMART | SM00297 | 2.2E-13 | 165 | 466 | IPR001487 | Bromodomain |
SuperFamily | SSF47370 | 2.62E-18 | 367 | 462 | IPR001487 | Bromodomain |
CDD | cd04369 | 1.34E-16 | 368 | 461 | No hit | No description |
Gene3D | G3DSA:1.20.920.10 | 2.5E-16 | 368 | 467 | IPR001487 | Bromodomain |
Pfam | PF00439 | 7.7E-12 | 372 | 451 | IPR001487 | Bromodomain |
PROSITE profile | PS50014 | 12.72 | 376 | 447 | IPR001487 | Bromodomain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 663 aa Download sequence Send to blast |
MEKEPGTTKK KTTWSTWEEL LLAFAVKRHG LKDWESVAME LQSRSSLPAL LTAQICKDKY 60 RDLRRRFINK NNSYDDEQFN DVIDDGVDGD GDATIPWIEE LRKLRVAELK QEVQRYDLSI 120 QSLQLKVKKM EEEREQSLKE ESLDDGLKPD LEDVKEERSQ NDKNSGADLK PEESTGKAVS 180 SEESDRENRS FNESNSTENR EIGVKNEPEP VETGEYRPVQ EVKPVSEEDS YNGSSSDRHE 240 EKKISRESGE SKEETKENSD VQSTATFTKK KRRHGGDSGR SSGNAVETGS PVAGLNKGEG 300 AVKSEPLIEF LDIIRSHKRG SMFKRRLDSQ KKRRHGGDSG RSSGNAVETG SPVAGLNKGE 360 GAVKSEPLIE FLDIIRSHKR GSMFKRRLDS QKTDKYKSMI QRHMDLETVQ ARIDDGSYCS 420 CPSKFYLDLL LIFNNAIVYF PKSSPESTAA NELRGIVMEE LKMKRTQQKD SSPGPGPLRI 480 QPKPELERSD SLLAKHKSTA PIVVCRKRSS ISAKAAASGI IKPEKQADIK PPLNPKPPIK 540 TSSNEEESSI KLGMKEKPVT GVRSMRRSNK GRPNNNASQS NNNQTTNTKQ TNTNSDKKEE 600 AKIEKKKEEA KKRGAAADFL KRIKKNSPTK GTLMEALKXR TKRKKRKWRK RKKLKNEELQ 660 QTS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 268 | 272 | KKKRR |
2 | 641 | 649 | KRKKRKWRK |
3 | 641 | 652 | KRKKRKWRKRKK |
4 | 641 | 653 | KRKKRKWRKRKKL |
5 | 641 | 654 | KRKKRKWRKRKKLK |
6 | 648 | 652 | RKRKK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016456285.1 | 0.0 | PREDICTED: uncharacterized protein LOC107780269 | ||||
TrEMBL | A0A1S3YW84 | 0.0 | A0A1S3YW84_TOBAC; uncharacterized protein LOC107780269 | ||||
STRING | XP_009793812.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4268 | 21 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44430.1 | 7e-70 | DNA-binding bromodomain-containing protein |