PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf04071g00009.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 663aa    MW: 74824.8 Da    PI: 10.1486
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf04071g00009.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding323e-101264248
                              SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrwqkyl 48
                                W+t+E++ll+ avk++G ++W+++a +++        +t+  ck+++++++
  Niben101Scf04071g00009.1 12 TTWSTWEELLLAFAVKRHGLKDWESVAMELQsrsslpALLTAQICKDKYRDLR 64
                              68**********************************9889*********9886 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.713664IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.4E-6771IPR009057Homeodomain-like
SuperFamilySSF466894.68E-7772IPR009057Homeodomain-like
SMARTSM007172.7E-51066IPR001005SANT/Myb domain
PfamPF002491.3E-81163IPR001005SANT/Myb domain
CDDcd001671.64E-51463No hitNo description
SMARTSM002972.2E-13165466IPR001487Bromodomain
SuperFamilySSF473702.62E-18367462IPR001487Bromodomain
CDDcd043691.34E-16368461No hitNo description
Gene3DG3DSA:1.20.920.102.5E-16368467IPR001487Bromodomain
PfamPF004397.7E-12372451IPR001487Bromodomain
PROSITE profilePS5001412.72376447IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 663 aa     Download sequence    Send to blast
MEKEPGTTKK KTTWSTWEEL LLAFAVKRHG LKDWESVAME LQSRSSLPAL LTAQICKDKY  60
RDLRRRFINK NNSYDDEQFN DVIDDGVDGD GDATIPWIEE LRKLRVAELK QEVQRYDLSI  120
QSLQLKVKKM EEEREQSLKE ESLDDGLKPD LEDVKEERSQ NDKNSGADLK PEESTGKAVS  180
SEESDRENRS FNESNSTENR EIGVKNEPEP VETGEYRPVQ EVKPVSEEDS YNGSSSDRHE  240
EKKISRESGE SKEETKENSD VQSTATFTKK KRRHGGDSGR SSGNAVETGS PVAGLNKGEG  300
AVKSEPLIEF LDIIRSHKRG SMFKRRLDSQ KKRRHGGDSG RSSGNAVETG SPVAGLNKGE  360
GAVKSEPLIE FLDIIRSHKR GSMFKRRLDS QKTDKYKSMI QRHMDLETVQ ARIDDGSYCS  420
CPSKFYLDLL LIFNNAIVYF PKSSPESTAA NELRGIVMEE LKMKRTQQKD SSPGPGPLRI  480
QPKPELERSD SLLAKHKSTA PIVVCRKRSS ISAKAAASGI IKPEKQADIK PPLNPKPPIK  540
TSSNEEESSI KLGMKEKPVT GVRSMRRSNK GRPNNNASQS NNNQTTNTKQ TNTNSDKKEE  600
AKIEKKKEEA KKRGAAADFL KRIKKNSPTK GTLMEALKXR TKRKKRKWRK RKKLKNEELQ  660
QTS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1268272KKKRR
2641649KRKKRKWRK
3641652KRKKRKWRKRKK
4641653KRKKRKWRKRKKL
5641654KRKKRKWRKRKKLK
6648652RKRKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016456285.10.0PREDICTED: uncharacterized protein LOC107780269
TrEMBLA0A1S3YW840.0A0A1S3YW84_TOBAC; uncharacterized protein LOC107780269
STRINGXP_009793812.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA42682136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44430.17e-70DNA-binding bromodomain-containing protein