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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Niben101Scf04052g01018.1 |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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| Family |
BBR-BPC |
| Protein Properties |
Length: 282aa MW: 31281.9 Da PI: 10.1223 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Niben101Scf04052g01018.1 | genome | BTI | - |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 347.1 | 4.2e-106 | 1 | 282 | 1 | 301 |
GAGA_bind 1 mdddgsrernkgyyepaaslkenlglqlmssiaerdaki...rernlalsekkaavaerd..........maflqrdkalaernk 72
mdddg + rn+gyyep+ lk +lglqlmss+ +rd+k+ r +n + + ++ +++rd +++ rd+++++
Niben101Scf04052g01018.1 1 MDDDGLNMRNWGYYEPS--LKGHLGLQLMSSVVDRDTKPfltRRENPIMLGANGMYHSRDsivpeaplshIDY-VRDSWINH--- 79
9*****99*******99..**********************9777888*******************999999.99****99... PP
GAGA_bind 73 alverdnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpiee.aaeeakekkkkkkrqra 156
++k+l++ + ++++vl++t+ +s+q++++p+++++ ++ ++++++e+ +k++ +
Niben101Scf04052g01018.1 80 -----RDKFLHMFPG--------NPYTTVLPETSASQSMQMVQQPDVTEDVR------------VNAeEPSVKNESGPSKRKTGG 139
.....7899999993........357899************66665555433............333034455566666666778 PP
GAGA_bind 157 kkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSv 241
++pk++kakk kk s+++k++ ++ +r+k kks+d+v+ng+++D+s++P+PvCsCtGa++qCY+WG+GGWqSaCCtt+iS+
Niben101Scf04052g01018.1 140 ATPKAPKAKKLKKGSSVPKENGTPRV--QRAKPAKKSMDIVINGIDMDISGIPIPVCSCTGAPQQCYRWGCGGWQSACCTTSISM 222
99***********9999977777666..79******************************************************* PP
GAGA_bind 242 yPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
yPLP+stkrrgaRiagrKmSqgafkk+LekLaaeGy+++np+DL++hWAkHGtnkfvtir
Niben101Scf04052g01018.1 223 YPLPMSTKRRGARIAGRKMSQGAFKKVLEKLAAEGYSFANPIDLRTHWAKHGTNKFVTIR 282
***********************************************************8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0050793 | Biological Process | regulation of developmental process |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 282 aa
Download sequence Send
to blast |
MDDDGLNMRN WGYYEPSLKG HLGLQLMSSV VDRDTKPFLT RRENPIMLGA NGMYHSRDSI 60
VPEAPLSHID YVRDSWINHR DKFLHMFPGN PYTTVLPETS ASQSMQMVQQ PDVTEDVRVN 120
AEEPSVKNES GPSKRKTGGA TPKAPKAKKL KKGSSVPKEN GTPRVQRAKP AKKSMDIVIN 180
GIDMDISGIP IPVCSCTGAP QQCYRWGCGG WQSACCTTSI SMYPLPMSTK RRGARIAGRK 240
MSQGAFKKVL EKLAAEGYSF ANPIDLRTHW AKHGTNKFVT IR
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}. |
