PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf04036g04001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 142aa    MW: 16115.7 Da    PI: 10.6689
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf04036g04001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.93.1e-102660137
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtl 37
                              +g+ T+eE+ l + + +++G++ Wk+Ia++++ gR+l
  Niben101Scf04036g04001.1 26 KGSLTPEEQNLVISLQAKYGNK-WKKIAAEVP-GRSL 60
                              6788******************.*********.**96 PP
2Myb_DNA-binding37.26.8e-1261102548
                               -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding   5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                               T+eE+ l + + +++G++ Wk+Ia++++ gRt+k +  +w  ++
  Niben101Scf04036g04001.1  61 TPEEQNLVISLQAKYGNK-WKKIAAEVP-GRTAKRLGKWWKVFK 102
                               9*****************.*********.*******99998875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.167124IPR017930Myb domain
SuperFamilySSF466894.47E-14659IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.6E-7632IPR009057Homeodomain-like
SMARTSM007176.62556IPR001005SANT/Myb domain
PfamPF002495.9E-92659IPR001005SANT/Myb domain
CDDcd001671.06E-53059No hitNo description
Gene3DG3DSA:1.10.10.607.9E-103359IPR009057Homeodomain-like
PROSITE profilePS5129418.7452106IPR017930Myb domain
SMARTSM007171.2E-657104IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-116198IPR009057Homeodomain-like
CDDcd001676.15E-861102No hitNo description
SuperFamilySSF466891.79E-861107IPR009057Homeodomain-like
PfamPF002493.2E-106199IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MGKTLDRDPK ACLERWKNYL KLGIKKGSLT PEEQNLVISL QAKYGNKWKK IAAEVPGRSL  60
TPEEQNLVIS LQAKYGNKWK KIAAEVPGRT AKRLGKWWKV FKEKQLKQLQ KSQKLQDYAD  120
QQFVSTISGG GSQERAVSGK EI
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for normal cell differentiation. Interacts directly with asymmetric leaves 2 (AS2) to repress the knox homeobox genes. {ECO:0000269|PubMed:10102816, ECO:0000269|PubMed:12750468, ECO:0000269|PubMed:9655808}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019262167.11e-55PREDICTED: transcription factor AS1-like
SwissprotQ9S7B21e-30RS2_MAIZE; Protein rough sheath 2
TrEMBLA0A314LB432e-54A0A314LB43_NICAT; Transcription factor as1
STRINGXP_009784773.11e-54(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37630.13e-29MYB family protein