PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf04018g04009.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRF
Protein Properties Length: 467aa    MW: 53314.7 Da    PI: 7.0411
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf04018g04009.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC77.31.5e-2474117144
                       WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                               d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e
  Niben101Scf04018g04009.1  74 DPEPGRCRRTDGKKWRCSKEAYADSKYCERHMHRGRNRSRKPVE 117
                               79***************************************997 PP
2QLQ60.35.5e-211044236
                       QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36
                              +FTa+Q+q+L++Q+l+yKy+a+++PvPp+Ll  i+
  Niben101Scf04018g04009.1 10 PFTATQWQELEHQALIYKYMASGMPVPPDLLYTIR 44
                              9*****************************97776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009515.9E-12945IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088805.0E-161043IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166623.2781045IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.65874118IPR014977WRC domain
PfamPF088799.1E-2175117IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MMSRARSGYP FTATQWQELE HQALIYKYMA SGMPVPPDLL YTIRRSLDSS NLFLHQPQHI  60
GWNCIQLGFG KKIDPEPGRC RRTDGKKWRC SKEAYADSKY CERHMHRGRN RSRKPVEVMT  120
TRTTNTTTMP PTAIPISSIK NNSNNYSPST PASFPYSNEP QHSFLYPHSS SSRPPGNIGF  180
SSQEQTKFLF DSAAYSRSAS SATSIDDDSW ELAPLTMGSP LGHSKQRTYS VSQIGESYLQ  240
LQSFNESSKQ QQQRQDQYNY YALGNGEDHQ QPKKVMHHFF DELPPDQHNK DSWLDSKTHL  300
SISVPDSSHD FFITHNEQTK FLFDSAAYSR SASSATSIDD DSWELAPLTM GSPLGHSKQR  360
TYSVSQIGES YLQLQSFNES SKQQQQRQDQ YNYYALGNGE DHQQPKKVMH HFFDELPPDQ  420
HNKDSWLDSK THLSISVPDS SHDFFITHNE IRKEAIVDLQ QTGASVV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019265537.10.0PREDICTED: growth-regulating factor 5-like
TrEMBLA0A314L3880.0A0A314L388_NICAT; Growth-regulating factor 5
STRINGXP_009615805.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7432384
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.11e-53growth-regulating factor 5