PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf03951g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | LBD | ||||||||
Protein Properties | Length: 270aa MW: 27597.2 Da PI: 7.7826 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 127.6 | 5.6e-40 | 45 | 145 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84 +C aCk+lrrkC+++C++apyf +eq +++fa+vhk+FGasnv+kll ++p ++r da+ +++yeA+ar+rdPv+G+v++i++lq Niben101Scf03951g00002.1 45 PCGACKFLRRKCVAGCIFAPYFDSEQgAAHFAAVHKVFGASNVSKLLLHIPVHKRLDAVVTICYEAQARLRDPVNGCVAHIFALQ 129 7***********************9989********************************************************* PP DUF260 85 qqleqlkaelallkee 100 qq+ +l+ael++l+++ Niben101Scf03951g00002.1 130 QQVVNLQAELSYLQAH 145 ***********99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.084 | 44 | 146 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 9.7E-39 | 45 | 143 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0010311 | Biological Process | lateral root formation | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 270 aa Download sequence Send to blast |
MSSNNPSSCT GGGITATGGG GVGGGTSGSS STGGGGGGGG GGGGPCGACK FLRRKCVAGC 60 IFAPYFDSEQ GAAHFAAVHK VFGASNVSKL LLHIPVHKRL DAVVTICYEA QARLRDPVNG 120 CVAHIFALQQ QVVNLQAELS YLQAHLATLE LPTPPPPPSR QSQTLLPPQP ALSIADLPTA 180 GPSILPAAYD LSSLFDPMVQ PSWAMQQPRP SPMDPRHYGG GIRAPVEISP SNPGGGSGDL 240 QELARELLHR HGSPTVVQCT ESSALPPQTK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 7e-36 | 41 | 146 | 7 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 7e-36 | 41 | 146 | 7 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the positive regulation of tracheary element (TE) differentiation. Involved in a positive feedback loop that maintains or promotes NAC030/VND7 expression that regulates TE differentiation-related genes (PubMed:19088331). Functions in the initiation and emergence of lateral roots, in conjunction with LBD16, downstream of ARF7 and ARF19 (PubMed:19717544, PubMed:23749813). Transcriptional activator that directly regulates EXPA14, a gene encoding a cell wall-loosening factor that promotes lateral root emergence. Activates EXPA14 by directly binding to a specific region of its promoter (PubMed:22974309). Transcriptional activator that directly regulates EXPA17, a gene encoding a cell wall-loosening factor that promotes lateral root emergence (PubMed:23872272). Acts downstream of the auxin influx carriers AUX1 and LAX1 in the regulation of lateral root initiation and development (PubMed:26059335). {ECO:0000269|PubMed:19088331, ECO:0000269|PubMed:19717544, ECO:0000269|PubMed:22974309, ECO:0000269|PubMed:23749813, ECO:0000269|PubMed:23872272, ECO:0000269|PubMed:26059335}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00314 | DAP | Transfer from AT2G45420 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:15659631, ECO:0000269|PubMed:19717544, ECO:0000269|PubMed:23749813}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009795320.1 | 1e-146 | PREDICTED: LOB domain-containing protein 30 | ||||
Refseq | XP_016488575.1 | 1e-146 | PREDICTED: LOB domain-containing protein 30-like | ||||
Swissprot | O22131 | 8e-81 | LBD18_ARATH; LOB domain-containing protein 18 | ||||
TrEMBL | A0A1S4BI76 | 1e-145 | A0A1S4BI76_TOBAC; LOB domain-containing protein 30-like | ||||
TrEMBL | A0A1U7Y911 | 1e-145 | A0A1U7Y911_NICSY; LOB domain-containing protein 30 | ||||
STRING | XP_009795320.1 | 1e-146 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA43 | 24 | 669 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45420.1 | 1e-81 | LOB domain-containing protein 18 |
Publications ? help Back to Top | |||
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