PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03944g03006.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 723aa    MW: 81430.2 Da    PI: 6.1315
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03944g03006.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS25.31.8e-08372412141
                      GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRl 41 
                               l++lL  cA+av++++ + a+ lL+++++ +sp+gd mqR+
  Niben101Scf03944g03006.1 372 LRTLLALCAQAVAAENRRTANGLLKQIRQSSSPTGDGMQRA 412
                               578999**********************************7 PP
2GRAS313.74.1e-9641972073374
                      GRAS  73 nsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..sk 155
                               + +++l+a++l+  ++P+ k+s +  N+aI++ +e++++vHiiD++i+ G+QWpaL+q L+sR +gpp+lRiTg++ p++g   +
  Niben101Scf03944g03006.1 419 SAADVLKAYQLLLAACPFRKISSFFSNKAIMNLAENASTVHIIDIGIMWGFQWPALIQRLSSRLGGPPKLRITGIDFPHPGfrPA 503
                               578999*************************************************************************9999** PP

                      GRAS 156 eeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvv 240
                                ++eetg+rLa++A++++vpfefn+ +a+++e+++le+L++++gE+l+Vn+ ++  +llde+v+++s+r+ vL+l+++l+P+v++
  Niben101Scf03944g03006.1 504 GRVEETGRRLANYAKSFNVPFEFNA-IAQKWETIKLEDLKINNGEVLVVNCLYRFRNLLDETVDVNSPRNVVLNLIRKLNPDVFI 587
                               *************************.7********************************************************** PP

                      GRAS 241 vveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFk 325
                               +   +  +n++ F +rf eal  ys+lfd+lea++pre +er+ +E+ +lgre++nv+ace +er+er et+++W+ r+++aGF+
  Niben101Scf03944g03006.1 588 LGIVNGAYNAPFFITRFREALFDYSSLFDMLEANIPREVHERMLIEKNILGREAMNVIACEATERIERPETYKQWQVRIMKAGFR 672
                               ************************************************************************************* PP

                      GRAS 326 pvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                               ++pl+e+++  a    + ++++ + ++ +s++l++gWk+r  +++S W+
  Niben101Scf03944g03006.1 673 QLPLDEEIMRMATERFKVYDKN-FVIDVDSEWLLQGWKGRIGYALSTWK 720
                               ****************999966.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098555.869346701IPR005202Transcription factor GRAS
PfamPF035146.1E-6372412IPR005202Transcription factor GRAS
PfamPF035141.4E-93419720IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 723 aa     Download sequence    Send to blast
MGLYEARSAI KLEDEAHSFF PDPNLINNLR VGDNLVNNNH VDITPFQSNT LVPSTADEDY  60
DFSDVVPKYI NQMLMEEDID EMSCMFQESA ALRATERSFY EVIGEEYPPP PNLDKPSNLG  120
QNGYNSMDRS GFHNSGNDGC DGVLCPNWNL DLGGNNVPHV PRFPDGIALS STSWLPHSSS  180
STVPDVLVDS PVSTLRIPDI FCDSESIMQF KKGVEEASKF IPTSNSLFAD VRYNVVGNEQ  240
NEERKDAVVK VEKYGEKQSP ERSRGKKNTL QEDVVDLTEE RNSKHSAVFS ESTVRSEMFD  300
RVLLCSAGKI ESALRETWQT ISRRNALENG VSKGSNGKNS QGKKQGSKRD VAELDKNSQA  360
KKQGGKRDVV DLRTLLALCA QAVAAENRRT ANGLLKQIRQ SSSPTGDGMQ RALITRPVSA  420
ADVLKAYQLL LAACPFRKIS SFFSNKAIMN LAENASTVHI IDIGIMWGFQ WPALIQRLSS  480
RLGGPPKLRI TGIDFPHPGF RPAGRVEETG RRLANYAKSF NVPFEFNAIA QKWETIKLED  540
LKINNGEVLV VNCLYRFRNL LDETVDVNSP RNVVLNLIRK LNPDVFILGI VNGAYNAPFF  600
ITRFREALFD YSSLFDMLEA NIPREVHERM LIEKNILGRE AMNVIACEAT ERIERPETYK  660
QWQVRIMKAG FRQLPLDEEI MRMATERFKV YDKNFVIDVD SEWLLQGWKG RIGYALSTWK  720
AAW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A9e-4337971926378Protein SCARECROW
5b3h_A8e-4337971925377Protein SCARECROW
5b3h_D8e-4337971925377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019245281.10.0PREDICTED: scarecrow-like protein 14
RefseqXP_019245282.10.0PREDICTED: scarecrow-like protein 14
RefseqXP_019245283.10.0PREDICTED: scarecrow-like protein 14
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A1J6IQX80.0A0A1J6IQX8_NICAT; Scarecrow-like protein 14
STRINGXP_009607974.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27624191
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]