PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03942g02002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 345aa    MW: 36705.8 Da    PI: 6.448
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03942g02002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.91.3e-09119155339
                               SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHH CS
           Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkq 39 
                               +WT+eE+ l++ + ++lG+g+W+ I+r + + Rt+ q
  Niben101Scf03942g02002.1 119 PWTEEEHRLFLLGLQKLGKGDWRGISRNFVTSRTPTQ 155
                               8****************************99999865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.60.104.2E-4223IPR001878Zinc finger, CCHC-type
PROSITE profilePS501588.515319IPR001878Zinc finger, CCHC-type
PROSITE profilePS500906.76112155IPR017877Myb-like domain
SuperFamilySSF466891.64E-8114155IPR009057Homeodomain-like
TIGRFAMsTIGR015572.4E-9115155IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.603.7E-10116155IPR009057Homeodomain-like
PfamPF002493.7E-7119155IPR001005SANT/Myb domain
CDDcd001671.43E-7119155No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MTRRCSHCNN NGHNSRTCPT TRGGTPTGGV GSSSGGGGGA SGGVRLFGVR LTDGSIMKKS  60
ASMGNLSSLH SYHSSSSPNP PGSPSSDGPH LPDGYLSDDP NTHASISANR RLERKKGVPW  120
TEEEHRLFLL GLQKLGKGDW RGISRNFVTS RTPTQGTDAS HPLPEEQFML PPRAIESDKE  180
HLAPSATKAI ETDFADSLPS LDLSLKSDFE SMETTPSEPV EEAKPNTTTN EIPSVFPAFL  240
PAYIPVPYSF WPSNAVPVPE DRGAEPSHHQ ILKPIPTVPK EPVNVDELVG MSQLTLVDAG  300
SGHIEPSPLS LKLTAEPSRQ SAFHASTPVK SSEITKGETA PIQAV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009626737.10.0PREDICTED: transcription factor MYB1R1
TrEMBLA0A1J6IRS60.0A0A1J6IRS6_NICAT; Transcription factor myb1r1
STRINGXP_009626737.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA117701922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16350.14e-50MYB_related family protein