PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03934g05002.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 575aa    MW: 63642.4 Da    PI: 6.9533
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03934g05002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.29.8e-16306352455
                               HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                       HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                hn  ErrRRdriN+++  L+el+P +      K +Ka++L +A+eY+ksLq
  Niben101Scf03934g05002.1 306 VHNLSERRRRDRINEKMKALQELIPRS-----NKSDKASMLDEAIEYLKSLQ 352
                               6*************************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.83E-20300369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.841302351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.05E-16305356No hitNo description
Gene3DG3DSA:4.10.280.101.1E-20306363IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-13306352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-16308357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 575 aa     Download sequence    Send to blast
MNHSVLNFEM DDDNPNIPIT SGITTPSKKS TVMDEDIMEL IWQNGQIIGQ SQNQRSQTVA  60
ASAPPIVLQE DEMATWLQYP LDDSSFERDL YADFLYTTPS SSVVTAAVPP PGEIDTATTE  120
IRPNQPPPQL RCTEGEFSHR LQNFGHFSRL PKAKSQNYTS TSRNTARVST IVDSNETPMA  180
EFSRVSDKVA PVSAGNDEGK ATTDTTTTTA VETTSGRETS TTACEFTGTS SASGSRGSVS  240
ASAEPPPPQP PQEAALMPAE NRKRKVRERG KEDNAEHSED AEFESADAKK QTSSSTSTRR  300
SRAAEVHNLS ERRRRDRINE KMKALQELIP RSNKSDKASM LDEAIEYLKS LQMQVQMMSM  360
GCSMVPMMYP GVPQYMPTMG MGMRMGMGTG MGMNRPMVPY PSLMPGPAMQ NAAAVAQMTP  420
RFPVPAYHLP SVPVPDPSRI RAANQPDYPI MNSLVGHNSN QPRLPNLSDP YQQYYALHQA  480
QNQRVEQPSS SNPSSRIEEG SPANHQAVFR VVHGGGDGGG RDGVREMRLI TRWINQESFS  540
PTKFCSRGKR ECHIYLFTEY AKFFLVHCLV KFLKR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1310315ERRRRD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016488551.10.0PREDICTED: transcription factor PIF1-like
TrEMBLA0A1S4BI580.0A0A1S4BI58_TOBAC; transcription factor PIF1-like
STRINGXP_009597633.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40592341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.31e-44phytochrome interacting factor 3-like 5