PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03934g00017.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family G2-like
Protein Properties Length: 455aa    MW: 49757.2 Da    PI: 4.8266
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03934g00017.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like108.24.4e-34246300155
                   G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                               k+r+rWtpeLHe+Fveav++LGGse+AtPk +l+lmkv+gLt++hvkSHLQkYR+
  Niben101Scf03934g00017.1 246 KQRMRWTPELHEAFVEAVNKLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRT 300
                               79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.0E-31243302IPR009057Homeodomain-like
PROSITE profilePS5129413.277243303IPR017930Myb domain
SuperFamilySSF466895.2E-18244300IPR009057Homeodomain-like
TIGRFAMsTIGR015572.5E-25246300IPR006447Myb domain, plants
PfamPF002492.7E-10248299IPR001005SANT/Myb domain
PfamPF143791.1E-12327368IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MEARPTLSVQ RAGAHQLSNF GASGAHSSLP VLPASLEDKY PMLPRAVLSS LPSNSGSVGH  60
LLSSSSGFST NLHFSSVLPH EEHSAPIPFI SQSTNNEALI PLANSGVLQS AASSQYLNEN  120
NEPWCTAPLP DYLDYSLNTP IHNTQLDCSN TGDCRIPSED LSKQSDWPEW ADLVMNDDDA  180
LSSNWNDIML DTSIADAEPK MQYQEQKQPS NFTVHQAQPL QQIPTASVET SAIVPASSTA  240
SGASSKQRMR WTPELHEAFV EAVNKLGGSE RATPKGVLKL MKVEGLTIYH VKSHLQKYRT  300
ARYKPETSEG SSEKKESSIG DLSALDLKTG IEITEALRLQ MEIQRNLQLR IEEQGRYLQE  360
MFEKQCKSIP SIDLVKASSS IAEDASAQST DAVQRSSNKT GPAVPPSNPQ EAGDYITQKV  420
GEKQKEQERE DLENPETNIS SSSNTPPTKR VKLDE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-32246304260Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-32246304260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-32246304260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-32246304260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-32246304260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-32246304260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-32246304260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-32246304260Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1445453PPTKRVKLD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009781616.10.0PREDICTED: protein PHR1-LIKE 1-like
TrEMBLA0A1U7WWD00.0A0A1U7WWD0_NICSY; protein PHR1-LIKE 1-like
STRINGXP_009781616.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27532349
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28610.16e-72phosphate starvation response 1