PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03929g03001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 320aa    MW: 36568 Da    PI: 6.6286
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03929g03001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.81.1e-171461148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              +g+WT eEd +l+++++ +G+g+W++ ++  g+ R++k+c++rw +yl
  Niben101Scf03929g03001.1 14 KGPWTSEEDNKLIEYIQVHGPGNWRSLPKNAGLQRCGKSCRLRWTNYL 61
                              79********************************************97 PP
2Myb_DNA-binding51.42.6e-1667111147
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                               rgr++ eE+e +++++  lG++ W++Ia++++ gRt++ +k++w+++
  Niben101Scf03929g03001.1  67 RGRFSFEEEETIIQLHSVLGNK-WSAIAARLP-GRTDNKIKNYWNTH 111
                               89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-25664IPR009057Homeodomain-like
PROSITE profilePS5129425.694965IPR017930Myb domain
SuperFamilySSF466898.24E-3111108IPR009057Homeodomain-like
SMARTSM007175.0E-141363IPR001005SANT/Myb domain
PfamPF002493.1E-161461IPR001005SANT/Myb domain
CDDcd001673.53E-121661No hitNo description
Gene3DG3DSA:1.10.10.606.0E-2665116IPR009057Homeodomain-like
SMARTSM007175.1E-1566114IPR001005SANT/Myb domain
PROSITE profilePS5129420.27266116IPR017930Myb domain
PfamPF002499.9E-1567111IPR001005SANT/Myb domain
CDDcd001674.23E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MGRSPSSDKN GLKKGPWTSE EDNKLIEYIQ VHGPGNWRSL PKNAGLQRCG KSCRLRWTNY  60
LRPDIKRGRF SFEEEETIIQ LHSVLGNKWS AIAARLPGRT DNKIKNYWNT HIRKRLLRMG  120
LDPVTHIPRL DLLDLSSLLN STQLNLSSLL GLQAFVNPQV LSLIASTLLP SHTENPEMLL  180
QRQLQDNQFL NTQIQNQEGS QVLFQKFQEN QILNASMENH NPNFQPNNQF QNQTSEIPTC  240
TTSNLGSYNL VNGQNLQENL MLPLQNYGQN QQENSSGQHF SFDSVLSTPL SSSTEDERDS  300
YCSNFMKFEI PESLFFDDLV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-301211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in osmotic stress and wounding signaling pathways (Probable). Contributes to basal resistance against the herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:19517001, ECO:0000305|PubMed:12857823}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by light (PubMed:8980549). Induced by wounding, salt stress and abscisic acid (PubMed:12857823). Induced by the lepidopteran herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:12857823, ECO:0000269|PubMed:19517001, ECO:0000269|PubMed:8980549}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009764351.10.0PREDICTED: transcription factor MYB39-like
RefseqXP_016458866.10.0PREDICTED: transcription factor MYB39-like
SwissprotQ9LDR82e-97MY102_ARATH; Transcription factor MYB102
TrEMBLA0A1S3Z3540.0A0A1S3Z354_TOBAC; transcription factor MYB39-like
TrEMBLA0A1U7VHH00.0A0A1U7VHH0_NICSY; transcription factor MYB39-like
STRINGXP_009764351.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21440.16e-88MYB-like 102
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]
  4. Zhu L,Guo J,Ma Z,Wang J,Zhou C
    Arabidopsis Transcription Factor MYB102 Increases Plant Susceptibility to Aphids by Substantial Activation of Ethylene Biosynthesis.
    Biomolecules, 2019.
    [PMID:29880735]