PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03923g03003.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HSF
Protein Properties Length: 373aa    MW: 43073.5 Da    PI: 5.2801
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03923g03003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.37.8e-36461382103
                               HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXX CS
              HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksF 86 
                               Fl+k+ye++ed+++++++sw++ g+sfvv+d++ f++++Lp++Fkh+nf+SFvRQLn+YgF+k++ e+         weF+++ F
  Niben101Scf03923g03003.1  46 FLTKTYEMVEDSSTDHVVSWNRGGQSFVVWDPHAFSTSLLPRFFKHNNFSSFVRQLNTYGFRKIDPEK---------WEFANEAF 121
                               9****************************************************************999.........******** PP

                               XXXXXXXXXXXXXXXXX CS
              HSF_DNA-bind  87 kkgkkellekikrkkse 103
                                kg+k+ll++++r+k++
  Niben101Scf03923g03003.1 122 LKGNKQLLRNMRRRKTT 138
                               **************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467852.99E-3542135IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.9E-5942135IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.5E-3842135IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.9E-3146135IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-194669IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-198496IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434085109IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-1997109IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MMNPLYSVKE EYPGSISGGG GGEPPPPVMT PPQPMEGLHD IGPPPFLTKT YEMVEDSSTD  60
HVVSWNRGGQ SFVVWDPHAF STSLLPRFFK HNNFSSFVRQ LNTYGFRKID PEKWEFANEA  120
FLKGNKQLLR NMRRRKTTNS QLLPTEQALG PCVELGRFGF DGEVDRLRRD KRVLMMELVK  180
LRQKQQNSRS YLRSLEVRLQ GTERKQQQMM NFLARAMQNP EFVQQLIRQK EKRKELEEAI  240
TKKRRRPIDQ GPSTLDVGGS SHPIKSEPLE FGEGSGFQVS ELEALALEMQ GFGRARRDQH  300
EEETREGLEQ FGNTDRELDE GFWEELFNDE DVSRNEDGEE EDVNVLAERL GIGYEDFGQV  360
YWSFKIAVLM MKQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A7e-244414018125Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1131136MRRRKT
2231245KRKELEEAITKKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019247894.10.0PREDICTED: heat stress transcription factor A-7a-like isoform X2
RefseqXP_019247901.10.0PREDICTED: heat stress transcription factor A-7a-like isoform X2
SwissprotQ9LUH81e-125HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A1J6JMM20.0A0A1J6JMM2_NICAT; Heat stress transcription factor a-6b
STRINGXP_009631618.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57224113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-121heat shock transcription factor A6B