PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03883g05010.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family AP2
Protein Properties Length: 451aa    MW: 49902.8 Da    PI: 6.6053
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03883g05010.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.65.5e-17155204155
                       AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                               s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Niben101Scf03883g05010.1 155 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 204
                               78*******************......55************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.0E-9155204IPR001471AP2/ERF domain
SuperFamilySSF541715.36E-16155213IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.2E-17156213IPR001471AP2/ERF domain
CDDcd000181.13E-11156214No hitNo description
PROSITE profilePS5103217.794156212IPR001471AP2/ERF domain
SMARTSM003801.3E-32156218IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-6247291IPR016177DNA-binding domain
CDDcd000183.17E-13247292No hitNo description
SMARTSM003805.7E-13248296IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MMLDLNLSAI YDEKVQEGSV ADESATSNSS ARNAEASSSA GDDETCSTRA GDDETCSTRA  60
GDMFAFNFDI LKVGGAETSR SCSNNDDDQE GYDENRRVTQ SEFVTRQLFP LDGSHTSQKP  120
VSFREAEIVR AQQQQQQQQP QQVKKSRRGP RSRSSQYRGV TFYRRTGRWE SHIWDCGKQV  180
YLGGFDTAHA AARAYDRAAI KFRGVDADIN FNLSDYEEDM KQMKSLSKEE FVHVLRRQST  240
GFSRGSSKYR GVTLHKCGRW EARMGQFLGK KAYDKAAIKC NGREAVTNFE PSTYEGKQIS  300
DPQSAGGQQD LDLNLGIATS SPKENERMGG FQYHPYDMQD ASKSQMDKSA PAIVGSSHFK  360
AQPVTSEQAH LWSGVYSNFF PSYEVGTTPM SMFTAAASSG FLTPATTVSA SPLSGPDPNM  420
STHSLPFASY STPSTNTTQY YYQIRPPLPP P
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009784820.10.0PREDICTED: ethylene-responsive transcription factor RAP2-7-like isoform X2
RefseqXP_016501409.10.0PREDICTED: ethylene-responsive transcription factor RAP2-7-like isoform X2
SwissprotQ9SK031e-100RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLA0A1S4CKH00.0A0A1S4CKH0_TOBAC; ethylene-responsive transcription factor RAP2-7-like isoform X2
TrEMBLA0A1U7XED60.0A0A1U7XED6_NICSY; ethylene-responsive transcription factor RAP2-7-like isoform X2
STRINGXP_009784819.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59124116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.21e-97related to AP2.7