PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf03882g01003.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 263aa MW: 30201.9 Da PI: 6.8026

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf03882g01003.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	25.8	1.9e-08	150	190	9	54
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR++i +++ L++l+P +K++ a++L +A++Y+k L Niben101Scf03882g01003.1 150 ARLRREKISEKIRILQRLVPGG-----TKMDTASMLDEAIRYVKFL 190 699***************87.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.939	141	190	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.54E-15	146	208	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.1E-13	147	205	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.3E-12	147	196	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.83E-11	147	195	No hit	No description
Pfam	PF00010	9.2E-6	151	190	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 263 aa Download sequence Send to blast
MDINHHLKLR TSTWQPTMAN VDDNIFDNHH HHQQQQRQFP FDHNPIWPSF PLQTPYHHLP 60 SFSSESQQQQ RQQQVPFDHV GNNHVQTLIE DHHDQEPEDD ENVEEEELGA MKEMMFKIAA 120 MQPVDIDPAT IRKPKRRNVR ISNDPQSVAA RLRREKISEK IRILQRLVPG GTKMDTASML 180 DEAIRYVKFL KRQIRQLQSS NHHLPPSQVL VVPCPSTENW ANMITPTKAL ILGSSDTSTT 240 SIATTTTFVG NSASTPMYEV IGN

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009783821.1	1e-149	PREDICTED: transcription factor HEC3-like
Refseq	XP_016456067.1	1e-149	PREDICTED: transcription factor HEC3-like
TrEMBL	A0A1S3YVT8	1e-148	A0A1S3YVT8_TOBAC; transcription factor HEC3-like
TrEMBL	A0A1U7X2C5	1e-148	A0A1U7X2C5_NICSY; transcription factor HEC3-like
STRING	XP_009783821.1	1e-149	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA752	23	101

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G09750.1	4e-45	bHLH family protein