PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf03863g01004.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

G2-like

Protein Properties

Length: 396aa MW: 44966.5 Da PI: 7.9084

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf03863g01004.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	100.9	8.3e-32	224	278	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWt++LH+rFve+v++LGG++kAtPk+il+lm+ +gLt+ hvkSHLQkYR Niben101Scf03863g01004.1 224 KTRIRWTQDLHDRFVECVNRLGGADKATPKAILKLMESDGLTIFHVKSHLQKYRN 278 68****************************************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	7.35E-17	223	278	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.9E-28	223	279	IPR009057	Homeodomain-like
PROSITE profile	PS51294	10.032	223	281	IPR017930	Myb domain
TIGRFAMs	TIGR01557	2.3E-24	224	279	IPR006447	Myb domain, plants
Pfam	PF00249	1.9E-8	228	277	IPR001005	SANT/Myb domain
Pfam	PF14379	2.2E-21	308	355	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 396 aa Download sequence Send to blast
MSIQRIGTQE RVPKNSAYPS DYTLEFARMP VQALHAQKQF SSYVGFSLPP ATPAEDVCQQ 60 QQQFIPNANP SSNSTIIGHI GSPSSAFFAT ERYLGLTQYD DQSKNFDFKI PSYGFLPDSP 120 AEDFHPKISL APFIRSQFSS SQPFSPDHQV PYRSHFSSLT EKERILHLKR KLLGEFDTPF 180 DGNQDFSLPH NLCGSHLEYM KQQSGFPSAN SNNSACSGGS VCNKTRIRWT QDLHDRFVEC 240 VNRLGGADKA TPKAILKLME SDGLTIFHVK SHLQKYRNAK YIPEPTDGKT EKRNCPNNVS 300 QIDSKTGMQI KEALQMQLEV QRRLHEQLEI QRKLQLRIEE QGKQLKMIFD QQQRTTRSLL 360 DTQNSSISAP EHDPSTMYDD MEVLVADNIR FPSKIS

Sequence ? help Back to Top

Protein Sequence Length: 396 aa Download sequence Send to blast

MSIQRIGTQE RVPKNSAYPS DYTLEFARMP VQALHAQKQF SSYVGFSLPP ATPAEDVCQQ  60
QQQFIPNANP SSNSTIIGHI GSPSSAFFAT ERYLGLTQYD DQSKNFDFKI PSYGFLPDSP  120
AEDFHPKISL APFIRSQFSS SQPFSPDHQV PYRSHFSSLT EKERILHLKR KLLGEFDTPF  180
DGNQDFSLPH NLCGSHLEYM KQQSGFPSAN SNNSACSGGS VCNKTRIRWT QDLHDRFVEC  240
VNRLGGADKA TPKAILKLME SDGLTIFHVK SHLQKYRNAK YIPEPTDGKT EKRNCPNNVS  300
QIDSKTGMQI KEALQMQLEV QRRLHEQLEI QRKLQLRIEE QGKQLKMIFD QQQRTTRSLL  360
DTQNSSISAP EHDPSTMYDD MEVLVADNIR FPSKIS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-22	224	281	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-22	224	281	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-22	224	281	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-22	224	281	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-22	224	281	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-22	224	281	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-22	224	281	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-22	224	281	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-22	224	281	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-22	224	281	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-22	224	281	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-22	224	281	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019247775.1	0.0	PREDICTED: myb family transcription factor PHL5-like
TrEMBL	A0A1J6J5C8	0.0	A0A1J6J5C8_NICAT; Myb family transcription factor phl5
STRING	XP_009801945.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2491	24	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06800.1	1e-72	G2-like family protein