PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf03850g01005.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 290aa    MW: 32935 Da    PI: 6.5109
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf03850g01005.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2582.4e-1879129256
                       AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                                y+GVr+++ +g+WvAeIr p +   r r++lg++ tae Aa a+++a+ kl+ge
  Niben101Scf03850g01005.1  79 LYRGVRQRH-WGKWVAEIRLPQN---RMRVWLGTYETAEAAAYAYDRAAYKLRGE 129
                               59******9.**********954...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.06E-1678137No hitNo description
Gene3DG3DSA:3.30.730.109.3E-3179137IPR001471AP2/ERF domain
PROSITE profilePS5103223.23579136IPR001471AP2/ERF domain
SuperFamilySSF541713.01E-2279136IPR016177DNA-binding domain
SMARTSM003802.7E-3479142IPR001471AP2/ERF domain
PfamPF008471.1E-1280129IPR001471AP2/ERF domain
PRINTSPR003674.6E-108091IPR001471AP2/ERF domain
PRINTSPR003674.6E-10102118IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MAANNVFEPL GSIIYNNNNY VSVPNDLGSS VYLRQIDLLQ KFWEENRTKF TIPTTSTQTA  60
YQNTSLYSKN YVCPSKKKLY RGVRQRHWGK WVAEIRLPQN RMRVWLGTYE TAEAAAYAYD  120
RAAYKLRGEY ARLNFPNICD DTSKLGFGDS TQMNAVKNSV DAKIQAICQK VKRERAKKGV  180
KKIVESDEKV EKNVDLDPSS CSSIVSNESG SNSDVISQST SEDGLWKSEN SPCSILDDCH  240
VGTKNDDLNC HITSITHQFE MPMMELEFED CSLTRMPSFD PELIWSILAN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-2275136163ATERF1
3gcc_A1e-2275136163ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016470931.11e-168PREDICTED: ethylene-responsive transcription factor ERF061-like
SwissprotQ9C7W25e-59ERF61_ARATH; Ethylene-responsive transcription factor ERF061
TrEMBLA0A1S4A2Y11e-167A0A1S4A2Y1_TOBAC; ethylene-responsive transcription factor ERF061-like
STRINGXP_009786377.11e-167(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36012345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64380.13e-58ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]