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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Niben101Scf03849g00015.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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| Family | MYB_related | ||||||||
| Protein Properties | Length: 278aa MW: 30020.1 Da PI: 4.5537 | ||||||||
| Description | MYB_related family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Myb_DNA-binding | 27.2 | 9e-09 | 56 | 80 | 22 | 47 |
T-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 22 gtWktIartmgkgRtlkqcksrwqky 47
++W++Iar ++ gR++k+c++rw +
Niben101Scf03849g00015.1 56 RDWSLIARGIP-GRSGKSCRLRWCNQ 80
38*********.***********985 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS51294 | 10.491 | 46 | 85 | IPR017930 | Myb domain |
| SuperFamily | SSF46689 | 2.12E-8 | 55 | 92 | IPR009057 | Homeodomain-like |
| CDD | cd00167 | 7.03E-6 | 56 | 79 | No hit | No description |
| Pfam | PF13921 | 8.3E-8 | 56 | 93 | No hit | No description |
| Gene3D | G3DSA:1.10.10.60 | 4.7E-13 | 56 | 94 | IPR009057 | Homeodomain-like |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 278 aa Download sequence Send to blast |
MENNILENLE GCYGGGSGDA GGSVGGDDEE TLMLEDGSGS SDRKKTADRV KGPWARDWSL 60 IARGIPGRSG KSCRLRWCNQ LDPAVKRKPF SDQTALKFKR CCAELGKLRS DSSNVPEDVC 120 AEISKASSEE TQSCGDMNSS KAIEGKDISS QENQEDNHYE DVTEKFNGEI AYGSLNAPET 180 LVQTPRLTPI ESPDIGISKL LEGAFNDRLV PHHSLLGPEF VDYADAPSFS SHELARLATE 240 ISNVAWFKSG LENSSIEVIF NPATRGTCGT SHLPSGPF |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_019241081.1 | 1e-143 | PREDICTED: myb-related protein B-like | ||||
| TrEMBL | A0A1J6JPM6 | 1e-142 | A0A1J6JPM6_NICAT; Transcription factor myb44 | ||||
| STRING | XP_009613649.1 | 1e-142 | (Nicotiana tomentosiformis) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Asterids | OGEA2611 | 24 | 54 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G09230.1 | 1e-35 | myb domain protein 1 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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